Factsheet for GSMUA_Achr6P29470_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
golgi 1
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g018540.1.1	Tomato	cytosol	49.55	64.72
TraesCS1D01G316200.1	Wheat	cytosol	65.62	35.99
TraesCS1A01G315900.1	Wheat	cytosol	65.4	35.82
Os05t0498300-01	Rice	cytosol	63.84	35.35
OQU78247	Sorghum	cytosol	61.83	35.29
VIT_19s0090g00670.t01	Wine grape	cytosol	61.83	34.93
KRH14375	Soybean	cytosol	60.49	33.37
KRH73763	Soybean	cytosol	59.6	32.96
AT3G20475.1	Thale cress	cytosol	58.04	32.22
CDY65220	Canola	cytosol	55.8	31.17
Bra035777.1-P	Field mustard	cytosol	55.13	29.23
CDY19637	Canola	cytosol	54.91	28.91
HORVU1Hr1G066830.9	Barley	cytosol	38.17	27.06
GSMUA_Achr8P08030_001	Banana	cytosol	9.38	14.09
TraesCS1B01G328200.1	Wheat	cytosol	16.52	13.96
Solyc10g018530.1.1	Tomato	endoplasmic reticulum, vacuole	12.5	10.96
GSMUA_Achr8P12770_001	Banana	extracellular, nucleus, plasma membrane	4.91	9.69
Zm00001d000329_P002	Maize	cytosol	8.93	8.75
GSMUA_Achr6P13490_001	Banana	cytosol	12.5	8.5
GSMUA_AchrUn_...	Banana	plastid	5.58	6.65
GSMUA_Achr1P01820_001	Banana	plastid	3.12	5.96
GSMUA_Achr5P24510_001	Banana	nucleus, plastid	14.51	5.1
GSMUA_Achr8P12760_001	Banana	cytosol	2.01	4.79
GSMUA_Achr7P13290_001	Banana	cytosol, plastid	11.83	4.76
GSMUA_AchrUn_...	Banana	nucleus	6.47	4.19
GSMUA_Achr8P08020_001	Banana	cytosol	3.12	2.83
GSMUA_Achr1P01780_001	Banana	nucleus	0.89	2.16
GSMUA_Achr7P04320_001	Banana	plastid	3.35	1.65
GSMUA_Achr1P01810_001	Banana	extracellular, plasma membrane	1.12	1.57
GSMUA_Achr6P29480_001	Banana	cytosol	1.12	1.35
GSMUA_Achr8P12780_001	Banana	cytosol, nucleus, plasma membrane	1.12	0.83
GSMUA_Achr1P01790_001	Banana	mitochondrion	0.22	0.45
GSMUA_Achr6P13480_001	Banana	cytosol	0.22	0.39

Protein Annotations

Gene3D:1.10.1420.10	MapMan:35.1	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259
GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030983
EnsemblPlantsGene:GSMUA_Achr6G29470_001	EnsemblPlants:GSMUA_Achr6P29470_001	EnsemblPlants:GSMUA_Achr6T29470_001	UniProt:M0TB92	PFAM:PF05192	PANTHER:PTHR11361
PANTHER:PTHR11361:SF20	SUPFAM:SSF48334	UniParc:UPI000296C921	SEG:seg	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_90.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr6G29470_001]

Coordinates

chr6:+:29701122..29712236

Molecular Weight (calculated)

51534.9 Da

IEP (calculated)

6.293

GRAVY (calculated)

0.022

Length

448 amino acids

Sequence
(BLAST)

001: MERLVLHVRK LAIKPASSFA PSFDRRTDRR MEMEEEVAET VEESQVYMAC IIHGHRVGVA YYDANTHQLF VIEFWEDGNG ELPLIDLVKY QVKPLVIYAS
101: TKTDELFLAA LQRNVSIETF EVKLIRSSIF SYEQAWHRLV YLRVAGMDDG LSIKERICFL NSMMDLGSEV QVRAAGGLLA ILENERLVDT FQQNECGYSS
201: ITIDCMSQIS FYPSCLNCNR SLKCNLFLTS RHRDKFLKLD AAAHEALQIF QVDKHPSDMG IGRAKEGFSV FGMFNKCVTP MGRRLLRAWF LRPILDLDML
301: NNRLNTISFF LCCEEVMSAL RETLKTVRDV PHMLKKFNSP SSLCTTSDWN AFLKCICSLL HINKIFEVGI SEYLQEKLEY LKLDLVEKAS SCITMELVYV
401: YDLVMGVIDV KRSKEKGYET LVKEGLCDEV DVKLIWNLTH LPFILYLC

Best Arabidopsis Sequence Match ( AT3G20475.1 )
(BLAST)

001: MEEMEDTETE PQVYMACIQH GRRVGVSYYD CSVRQLHVLE FWEEDCSDFT LINMVKYQAK PSIIYASTKS EESFVAALQQ NDGTDETTMV KLVKSSTFSY
101: EQAWHRLVYL RVTGMDDGLN IKERICYLSS MMDVGSEVQV RVSGGLLAIL ESERIVETLE QNESGSASIA IDSVMEVPLN KFLKLDAAAH EALQIFQTDK
201: HPSHMGIGRA KEGFSVFGMM NKCATPMGRR LLRSWFMRPI LDLEVLDRRL NAISFFISSV ELMASLRETL KSVKDISHLL KKFNSPTSLC TSNDWTAFLK
301: SISALLHVNK IFEVGVSESL REHMRRFNLD IIEKAGLCIS TELDYVYELV IGVIDVTRSK ERGYQTLVKE GFCAELDELR QIYEELPEFL QEVSAMELEH
401: FPHLHKEKLP PCIVYIQQIG YLMCIFGEKL DETALNRLTE FEFAFSDMDG ETQRFFYHTS KTRELDNLLG DIYHKILDME RAIIRDLLSH TLLFSAHLLK
501: AVNFVAELDC ILSLACVAHQ NNYVRPVLTV ESLLDIRNGR HVLQEMAVDT FIPNDTEIND NGRIHIITGP NYSGKSIYVK QVALIVFLSH IGSFVPADAA
601: TVGLTDRIFC AMGSKFMTAE QSTFMIDLHQ VGMMLRQATS RSLCLLDEFG KGTLTEDGIG LLGGTISHFA TCAEPPRVVV CTHLTELLNE SCLPVSEKIK
701: FYTMSVLRPD TESANMEEIV FLYRLIPGQT LLSYGLHCAL LAGVPEEVVK RAAIVLDAFE SNNNVDKLSL DKISSQDQAF KDAVDKFAEL DISKGDIHAF
801: FQDIFTS

Arabidopsis Description

MSH5DNA mismatch repair protein MSH5 [Source:UniProtKB/Swiss-Prot;Acc:F4JEP5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.