Factsheet for GSMUA_Achr6P13480_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028327.1-P	Field mustard	extracellular, vacuole	41.25	64.24
PGSC0003DMT400021697	Potato	cytosol, extracellular, nucleus	43.97	56.22
PGSC0003DMT400021699	Potato	cytosol	30.74	49.69
CDY40145	Canola	cytosol, extracellular, plastid	15.95	48.81
Os05t0274200-01	Rice	cytosol	77.04	21.02
VIT_17s0000g04170.t01	Wine grape	cytosol	76.65	20.85
EER99643	Sorghum	nucleus	75.88	20.7
TraesCS1D01G131600.3	Wheat	nucleus	75.49	20.59
TraesCS1A01G135100.1	Wheat	nucleus	75.88	20.33
KRH03809	Soybean	nucleus	73.93	20.17
AT3G18524.1	Thale cress	nucleus	73.15	20.06
TraesCS1B01G149700.3	Wheat	nucleus	74.71	19.92
GSMUA_Achr1P01790_001	Banana	mitochondrion	17.12	19.73
HORVU1Hr1G030930.22	Barley	plastid	75.1	19.36
CDY52899	Canola	nucleus	70.43	19.32
CDX82340	Canola	nucleus	70.04	19.21
Bra001709.1-P	Field mustard	nucleus	70.04	19.21
Solyc06g069230.2.1	Tomato	cytosol	70.04	19.09
PGSC0003DMT400010422	Potato	cytosol	70.04	19.09
Zm00001d022028_P005	Maize	nucleus	56.42	16.29
GSMUA_Achr8P08020_001	Banana	cytosol	26.85	13.97
GSMUA_Achr1P01780_001	Banana	nucleus	9.73	13.51
GSMUA_Achr6P29480_001	Banana	cytosol	17.12	11.86
GSMUA_AchrUn_...	Banana	nucleus	28.02	10.4
GSMUA_Achr8P12780_001	Banana	cytosol, nucleus, plasma membrane	19.84	8.51
GSMUA_Achr7P13290_001	Banana	cytosol, plastid	28.79	6.64
GSMUA_Achr5P24510_001	Banana	nucleus, plastid	26.07	5.25
GSMUA_Achr7P04320_001	Banana	plastid	17.9	5.05
GSMUA_Achr1P01810_001	Banana	extracellular, plasma membrane	3.11	2.51
GSMUA_Achr1P01820_001	Banana	plastid	0.78	0.85
GSMUA_Achr8P08030_001	Banana	cytosol	0.78	0.67
GSMUA_Achr6P13490_001	Banana	cytosol	1.56	0.61
GSMUA_Achr6P29470_001	Banana	mitochondrion	0.39	0.22
GSMUA_Achr8P12770_001	Banana	extracellular, nucleus, plasma membrane	0.0	0.0
GSMUA_AchrUn_...	Banana	plastid	0.0	0.0
GSMUA_Achr8P12760_001	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DNA_mismatch_repair_MutS_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030983	GO:GO:0032300	EnsemblPlantsGene:GSMUA_Achr6G13480_001	EnsemblPlants:GSMUA_Achr6P13480_001	EnsemblPlants:GSMUA_Achr6T13480_001
UniProt:M0T6P6	InterPro:Msh2	InterPro:P-loop_NTPase	PFAM:PF00488	ScanProsite:PS00486	PANTHER:PTHR11361
PANTHER:PTHR11361:SF35	SMART:SM00534	SUPFAM:SSF52540	UniParc:UPI0002962FC7	:	:

Description

DNA mismatch repair protein MSH2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G13480_001]

Coordinates

chr6:-:8962011..8969028

Molecular Weight (calculated)

28337.7 Da

IEP (calculated)

5.346

GRAVY (calculated)

-0.204

Length

257 amino acids

Sequence
(BLAST)

001: MAQVGCFVPC ERATISIRDC IFARVGAGDC QLRGVSTFMQ EMLETASILK GASEKSLIII DELGRGTSTY DGFGLAWAIC EHLVEVTRAP TLFATHFHEL
101: TSLAHANAHD CPNLSSVGVA NYHVGAHIDP SSRKLTMMYK VEPGACDQSF GIHVAELANF PEDVVNLARR KAEELEDFSQ PSNISDGSEK EVGCKRKRVC
201: NPDDMSSGAA RAHRFLEEFS ALPLDQMDLK QAMEHVCKLR NELEKDAANS PWLQQFF

Best Arabidopsis Sequence Match ( AT3G18524.1 )
(BLAST)

001: MEGNFEEQNK LPELKLDAKQ AQGFLSFYKT LPNDTRAVRF FDRKDYYTAH GENSVFIAKT YYHTTTALRQ LGSGSNALSS VSISRNMFET IARDLLLERN
101: DHTVELYEGS GSNWRLVKTG SPGNIGSFED VLFANNEMQD TPVVVSIFPS FHDGRCVIGM AYVDLTRRVL GLAEFLDDSR FTNLESSLIA LGAKECIFPA
201: ESGKSNECKS LYDSLERCAV MITERKKHEF KGRDLDSDLK RLVKGNIEPV RDLVSGFDLA TPALGALLSF SELLSNEDNY GNFTIRRYDI GGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI KTRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLLRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTAMQQYTGE FASLISERYL KKLEALSDQD HLGKFIDLVE CSVDLDQLEN GEYMISSSYD TKLASLKDQK ELLEQQIHEL HKKTAIELDL
501: QVDKALKLDK AAQFGHVFRI TKKEEPKIRK KLTTQFIVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYRSC QKELVDRVVE TVTSFSEVFE DLAGLLSEMD
601: VLLSFADLAA SCPTPYCRPE ITSSDAGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGKSW FQIVTGPNMG GKSTFIRQVG VIVLMAQVGS FVPCDKASIS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGASDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KRAPTLFATH FHELTALAQA NSEVSGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPSSMIINNE ESGKRKSRED DPDEVSRGAE RAHKFLKEFA
901: AIPLDKMELK DSLQRVREMK DELEKDAADC HWLRQFL

Arabidopsis Description

MSH2DNA mismatch repair protein MSH2 [Source:UniProtKB/Swiss-Prot;Acc:O24617]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.