Factsheet for VIT_19s0090g00670.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14375	Soybean	cytosol	79.32	77.46
KRH73763	Soybean	cytosol	78.81	77.16
AT3G20475.1	Thale cress	cytosol	77.43	76.08
CDY65220	Canola	cytosol	75.91	75.06
Solyc10g018530.1.1	Tomato	endoplasmic reticulum, vacuole	48.17	74.76
GSMUA_Achr6P29480_001	Banana	cytosol	34.93	74.66
HORVU1Hr1G066830.9	Barley	cytosol	55.61	69.78
Solyc10g018540.1.1	Tomato	cytosol	30.14	69.68
CDY19637	Canola	cytosol	74.65	69.57
OQU78247	Sorghum	cytosol	68.85	69.55
Bra035777.1-P	Field mustard	cytosol	74.02	69.47
TraesCS1D01G316200.1	Wheat	cytosol	70.37	68.3
TraesCS1A01G315900.1	Wheat	cytosol	69.99	67.85
Os05t0498300-01	Rice	cytosol	68.98	67.61
TraesCS1B01G328200.1	Wheat	cytosol	44.14	66.04
Zm00001d000329_P002	Maize	cytosol	36.95	64.11
GSMUA_Achr6P29470_001	Banana	mitochondrion	34.93	61.83
VIT_17s0000g04170.t01	Wine grape	cytosol	21.31	17.88
VIT_16s0100g01310.t01	Wine grape	plastid	21.06	15.03
VIT_00s0229g00210.t01	Wine grape	endoplasmic reticulum, golgi	4.92	15.0
VIT_07s0005g01370.t01	Wine grape	plastid	21.06	12.88
VIT_11s0016g04090.t01	Wine grape	nucleus	17.65	12.46
VIT_00s0229g00200.t01	Wine grape	cytosol	2.14	11.81
VIT_05s0049g02090.t01	Wine grape	mitochondrion	14.88	10.31
VIT_16s0098g00680.t01	Wine grape	cytosol, plastid	10.47	10.15
VIT_00s0388g00030.t01	Wine grape	plastid	4.16	6.73
VIT_00s0485g00020.t01	Wine grape	mitochondrion, plastid	3.91	6.6

Protein Annotations

Gene3D:1.10.1420.10	EntrezGene:100252044	wikigene:100252044	MapMan:13.3.6.5.1.2.2	Gene3D:3.40.50.300	ProteinID:CBI26657
ProteinID:CBI26657.3	UniProt:D7T7Z8	InterPro:DNA_mismatch_repair_Msh2	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core
InterPro:DNA_mismatch_repair_MutS_sf	EMBL:FN595751	GO:GO:0000003	GO:GO:0000166	GO:GO:0000712	GO:GO:0000794
GO:GO:0000795	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0007049	GO:GO:0007131	GO:GO:0008094
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010777	GO:GO:0016043	GO:GO:0016787
GO:GO:0030983	GO:GO:0043073	GO:GO:0045143	GO:GO:0051026	EntrezGene:LOC100252044	wikigene:LOC100252044
InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF05190	PFAM:PF05192	PIRSF:PIRSF005813	ScanProsite:PS00486
PANTHER:PTHR11361	PANTHER:PTHR11361:SF20	SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540
UniParc:UPI0001BE2BDE	ArrayExpress:VIT_19s0090g00670	EnsemblPlantsGene:VIT_19s0090g00670	EnsemblPlants:VIT_19s0090g00670.t01	RefSeq:XP_002279440	RefSeq:XP_002279440.1

Description

No Description!

Coordinates

chr19:-:6732346..6746210

Molecular Weight (calculated)

89373.3 Da

IEP (calculated)

5.349

GRAVY (calculated)

0.044

Length

793 amino acids

Sequence
(BLAST)

001: MACILHGHRV GISYYDSSIR QLHVLEVWED GSSDFPLIDL VKYQAKPLII YTSTKCEDSF LSALQRSDGT TEAPTVKLMK SSIFSYEQAW HRLIYLRVTG
101: MDDGLNIKER ICFLSSMMDI GSDIQVRASG GLLAILENER IVDTLEQKEC GNASITIDFV TEISLHKFLK LDAAAHEALQ IFQIDKHPSH MGIGRAKEGF
201: SVFGMMNKCV TPMGRRLLRN WFLRPILDLE NLNSRLNAIS FFLCSEELTV SLRETLKSVK DIPYILKKFN SPSSICTSTD WASFLKSVCS LLHVNKIFEV
301: GISESLQEQV KYLNLDIVEK AHSCITTELA YVYELVIGVI DVNRSKEKGY GTLVKEGFCD ELDELRQIYE ELPEFLEEVS SLELARLPHF CGGKLVPCIV
401: YIHQIGYLMC IFEDKLDETT LEKLQDFEFA FSDGDGDTKK FFYRTSKTRE LDNLLGDIYH KILDMERAIT RDLVSHILLF SMHLLKAVSF AAELDCFLSL
501: SLIAHQNNYV RPVLSADSLL DIRNGRHVLQ EMTVDTFIPN DTKILDDGRI NIITGPNYSG KSVYIKQVAL IVFLSHIGSF VPADAATVGL TDRIFCAMGS
601: KPMTAEQSTF MIDLHQVGMM LRHANSRSLC LLDEFGKGTL TEDGIGLLGG TINHFVASDD PPKVLVCTHL TEMFNESCLP KSEKIRFYTM SVLRPDNNCT
701: DIEDIVFLYR LVPGHALLSY GLHCALLAGV PEDVIKRAAC ILDAIGNNKH VERLCNERIS AQDQLYKDAV DKMLAFDILK GDLNLFFQDI FPS

Best Arabidopsis Sequence Match ( AT3G20475.1 )
(BLAST)

001: MEEMEDTETE PQVYMACIQH GRRVGVSYYD CSVRQLHVLE FWEEDCSDFT LINMVKYQAK PSIIYASTKS EESFVAALQQ NDGTDETTMV KLVKSSTFSY
101: EQAWHRLVYL RVTGMDDGLN IKERICYLSS MMDVGSEVQV RVSGGLLAIL ESERIVETLE QNESGSASIA IDSVMEVPLN KFLKLDAAAH EALQIFQTDK
201: HPSHMGIGRA KEGFSVFGMM NKCATPMGRR LLRSWFMRPI LDLEVLDRRL NAISFFISSV ELMASLRETL KSVKDISHLL KKFNSPTSLC TSNDWTAFLK
301: SISALLHVNK IFEVGVSESL REHMRRFNLD IIEKAGLCIS TELDYVYELV IGVIDVTRSK ERGYQTLVKE GFCAELDELR QIYEELPEFL QEVSAMELEH
401: FPHLHKEKLP PCIVYIQQIG YLMCIFGEKL DETALNRLTE FEFAFSDMDG ETQRFFYHTS KTRELDNLLG DIYHKILDME RAIIRDLLSH TLLFSAHLLK
501: AVNFVAELDC ILSLACVAHQ NNYVRPVLTV ESLLDIRNGR HVLQEMAVDT FIPNDTEIND NGRIHIITGP NYSGKSIYVK QVALIVFLSH IGSFVPADAA
601: TVGLTDRIFC AMGSKFMTAE QSTFMIDLHQ VGMMLRQATS RSLCLLDEFG KGTLTEDGIG LLGGTISHFA TCAEPPRVVV CTHLTELLNE SCLPVSEKIK
701: FYTMSVLRPD TESANMEEIV FLYRLIPGQT LLSYGLHCAL LAGVPEEVVK RAAIVLDAFE SNNNVDKLSL DKISSQDQAF KDAVDKFAEL DISKGDIHAF
801: FQDIFTS

Arabidopsis Description

MSH5DNA mismatch repair protein MSH5 [Source:UniProtKB/Swiss-Prot;Acc:F4JEP5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.