CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 1
plastid 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88723	Soybean	cytosol, extracellular, mitochondrion, nucleus	78.05	79.34
KRG88725	Soybean	nucleus	96.75	41.75
KRG90178	Soybean	mitochondrion	77.24	21.21
KRH33548	Soybean	nucleus	76.42	8.32
KRH39265	Soybean	mitochondrion	17.89	2.04
KRH48416	Soybean	cytosol	17.07	1.86
KRG96523	Soybean	plastid	17.89	1.73
KRG91481	Soybean	plastid	13.82	1.59
KRH20465	Soybean	cytosol	2.44	1.48
KRH16965	Soybean	cytosol, mitochondrion, nucleus, plastid	5.69	1.29
KRH03809	Soybean	nucleus	9.76	1.27
Os04t0680700-01	Rice	plastid	4.88	1.21
KRH50031	Soybean	plastid	8.94	1.2
Zm00001d001806_P001	Maize	plastid	7.32	1.0
KRH72584	Soybean	plastid	5.69	0.89
EES11666	Sorghum	plastid	6.5	0.88
TraesCS2A01G588000.2	Wheat	plastid	6.5	0.87
TraesCS2D01G565200.1	Wheat	plastid	6.5	0.87
TraesCS2B01G595200.1	Wheat	endoplasmic reticulum, plastid, vacuole	6.5	0.87
HORVU2Hr1G118740.5	Barley	plastid	2.44	0.34
KRG90177	Soybean	cytosol	1.63	0.3
KRH73763	Soybean	cytosol	1.63	0.25
KRH14375	Soybean	cytosol	1.63	0.25
KRH35336	Soybean	cytosol	0.81	0.24
KRH28123	Soybean	cytosol	0.81	0.13
PGSC0003DMT400001555	Potato	cytosol	0.0	0.0
KRH16964	Soybean	cytosol, nucleus	0.0	0.0

Protein Annotations

EntrezGene:102661030	Gene3D:3.40.1170.10	MapMan:35.1	UniProt:A0A0R0HSB2	EMBL:ACUP02006481	InterPro:DNA_mismatch_repair_MutS-lik_N
InterPro:DNA_mismatch_repair_MutS_N	EnsemblPlantsGene:GLYMA_10G121600	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030983	InterPro:IPR016151	ProteinID:KRH33411.1
ProteinID:KRH33412.1	ProteinID:KRH33413.1	ProteinID:KRH33414.1	EnsemblPlants:KRH33415	ProteinID:KRH33415	ProteinID:KRH33415.1
ProteinID:KRH33416.1	PFAM:PF01624	PANTHER:PTHR11361	PANTHER:PTHR11361:SF82	SUPFAM:SSF55271	UniParc:UPI0006EDBA82

Description

hypothetical protein

Coordinates

chr10:-:31031755..31036087

Molecular Weight (calculated)

13872.9 Da

IEP (calculated)

8.020

GRAVY (calculated)

-0.156

Length

123 amino acids

Sequence
(BLAST)

001: MCRKLSTVQL TERLDYSNLP GLNPNMKNGS LKVGTLNWEM LQFKPKFPRQ VLLCRVGEFY EAWGINVCIL VEYEVLNPFG GLQSDSIPRA GCPVVNLRQT
101: LDDRTQSGYS VCLPSYQSMS TCC

Best Arabidopsis Sequence Match ( AT3G24320.1 )
(BLAST)

0001: MHWIATRNAV VSFPKWRFFF RSSYRTYSSL KPSSPILLNR RYSEGISCLR DGKSLKRITT ASKKVKTSSD VLTDKDLSHL VWWKERLQTC KKPSTLQLIE
0101: RLMYTNLLGL DPSLRNGSLK DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRNGYSVC
0201: IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR
0301: HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP
0401: SLYVRDLLLN PPAYDIALKI QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE ILKLLMDPTW VATGLKIDFD
0501: TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY
0601: AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA
0701: LFSHACEGRR RKWVFPTLVG FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS ICAAALLGIS GLMVPAESAC
0801: IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM
0901: GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM
1001: IEPEAIECLS IGARELPPPS TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL LINQLHEQGY SLANLADGKH
1101: RNFGTSSSLS TSDVVSIL

Arabidopsis Description

MSH1DNA mismatch repair protein MSH1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84LK0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.