CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48416	Soybean	cytosol	93.42	89.28
Solyc07g018350.2.1	Tomato	nucleus	46.71	62.15
VIT_11s0016g04090.t01	Wine grape	nucleus	64.69	62.1
AT3G24495.1	Thale cress	mitochondrion	61.54	59.87
CDY25338	Canola	plastid	60.7	59.55
Bra028373.1-P	Field mustard	mitochondrion, plastid	61.17	59.51
CDY47171	Canola	mitochondrion, nucleus	60.24	59.47
GSMUA_Achr7P13290_001	Banana	cytosol, plastid	56.72	54.94
TraesCS3B01G136600.1	Wheat	mitochondrion	51.62	45.58
TraesCS3D01G119400.1	Wheat	mitochondrion	51.16	45.17
Os01t0180600-01	Rice	mitochondrion, nucleus	51.07	45.02
TraesCS3A01G117500.1	Wheat	mitochondrion, nucleus	50.88	44.93
KXG31683	Sorghum	mitochondrion, nucleus	50.42	44.19
Zm00001d039596_P004	Maize	nucleus	49.95	43.5
KRH35336	Soybean	cytosol	10.84	27.53
KRG96523	Soybean	plastid	29.56	25.06
KRH28123	Soybean	cytosol	15.94	21.66
KRG91481	Soybean	plastid	20.57	20.75
KRH03809	Soybean	nucleus	17.42	19.96
KRH33415	Soybean	cytosol, extracellular, plastid	2.04	17.89
KRH14375	Soybean	cytosol	12.79	17.0
KRH73763	Soybean	cytosol	12.7	16.91
KRG88723	Soybean	cytosol, extracellular, mitochondrion, nucleus	1.76	15.7
KRH16965	Soybean	cytosol, mitochondrion, nucleus, plastid	6.86	13.68
KRG90178	Soybean	mitochondrion	5.38	12.95
KRH72584	Soybean	plastid	9.08	12.41
KRH33548	Soybean	nucleus	12.88	12.3
KRG90177	Soybean	cytosol	7.6	12.17
KRH20465	Soybean	cytosol	2.13	11.33
KRH50031	Soybean	plastid	9.18	10.83
KRG88725	Soybean	nucleus	2.41	9.12
KRH16964	Soybean	cytosol, nucleus	0.46	3.01

Protein Annotations

Gene3D:1.10.1420.10	EntrezGene:100818859	MapMan:14.7.1.4	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300
EMBL:ACUP02005928	InterPro:DNA_mismatch_repair_Msh2	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_core
InterPro:DNA_mismatch_repair_MutS_sf	InterPro:DNA_mmatch_repair_MutS_con_dom	EnsemblPlantsGene:GLYMA_09G189100	GO:GO:0000166	GO:GO:0000404	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298
GO:GO:0006950	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0030983	GO:GO:0032300	GO:GO:0043570	InterPro:IPR016151	InterPro:IPR036678
UniProt:K7LER5	EnsemblPlants:KRH39265	ProteinID:KRH39265	ProteinID:KRH39265.1	InterPro:MutS_con_dom_sf	InterPro:P-loop_NTPase
PFAM:PF00488	PFAM:PF01624	PFAM:PF05188	PFAM:PF05192	PIRSF:PIRSF005813	ScanProsite:PS00486
PANTHER:PTHR11361	PANTHER:PTHR11361:SF121	SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540
SUPFAM:SSF53150	SUPFAM:SSF55271	UniParc:UPI000294AFFC	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:-:41386016..41394567

Molecular Weight (calculated)

119440.0 Da

IEP (calculated)

6.897

GRAVY (calculated)

-0.188

Length

1079 amino acids

Sequence
(BLAST)

0001: MLRYFHRISG DRPATAPKVQ QPNHNVTAAV NQPPPADDVR GTDTPPEKVP RRVLPANFAP NENNSGPSLF ESIMHKFVKV DDNERVIQRS HSLNGSLAKS
0101: SLPVGICADT DRKVVNMEET AFQPLGKVKD NAVNFKEKAN QENFALVETD DDVTGPETPG MLPLASHLKR SREDGSKFGS LLNSGKRVRF LDDSLELDMT
0201: KKEAEVASKF EWLNPSRIRD ANGRRSNDPL YDRTTLYIPP EALGKMSASQ KQYWSVKCKY MDVLLFFKVG KFYELYEMDA DIGHKELDWK ITLSGVGKCR
0301: QVGISESGID DAVQKLVACG YKVGRVEQLE TSEEAKARGA NSVIRRKLVQ VVTPSTNVDG NIGPDAVHLL SIKEENNGLD NGAVVYGFAF VDCARLRFWV
0401: GSIDDDASCS ALGALLMQVS PTEVIYDNRG LSKEAQKALR KFSLNGSTAL QFTPVQSMTD LVSNEIRDLI HSKGYFKGSS HSLDHVLRSV IHREITLSAL
0501: VGLIDHLDRL MLNDALQNGD LYTYQVYRGC LKMDGPTMIN LELFVNNEDG GKSGSLYNCL DKCVTSSGKR LLRNWICCPL VDAEIINNRL DIVDDLMANP
0601: EIVSHIAQHL RRLPDLEHLL GRIKSSLQLS GPLLLPFLGK KILKQRVKVF GSLVKGLRTA LSLLLLLQKE QPLISSLTKV FKLPILTGSN GLDQFLAQFE
0701: AAVDSDFPNY QNHNVTDSDA ETLTILAELF LEKAAQWFEV VHAINCIDVL RSFAVTSTFS RGTMSRPVIV ASKGTSKDNG GTVLKMKGLW HPFALGDSGC
0801: LPVPNDVILG ENEDGSHPRT LLLTGPNMGG KSTLLRSTCL AVIMAQLGCY VPCESCVLSA VDIIFTRLGA KDRIMTGEST FFVECTETAL VLQNATQDSL
0901: VILDELGRGT STFDGYAIAY AVFRHLIEKV NCRMLFATHY HSLTKEFASH PRVIMQHMAC AFKSKSDTHS MRDQELVFLY RLASGPCPES YGLQVALMAG
1001: IPEKTVNIAS KASQQMKKSI GQSFRSSEQR SEFSTLHEEW LKTLVSISRI EDCNSLDEDA LDTLICLWYE LKTSFISGK

Best Arabidopsis Sequence Match ( AT3G24495.1 )
(BLAST)

0001: MQRQRSILSF FQKPTAATTK GLVSGDAASG GGGSGGPRFN VKEGDAKGDA SVRFAVSKSV DEVRGTDTPP EKVPRRVLPS GFKPAESAGD ASSLFSNIMH
0101: KFVKVDDRDC SGERSREDVV PLNDSSLCMK ANDVIPQFRS NNGKTQERNH AFSFSGRAEL RSVEDIGVDG DVPGPETPGM RPRASRLKRV LEDEMTFKED
0201: KVPVLDSNKR LKMLQDPVCG EKKEVNEGTK FEWLESSRIR DANRRRPDDP LYDRKTLHIP PDVFKKMSAS QKQYWSVKSE YMDIVLFFKV GKFYELYELD
0301: AELGHKELDW KMTMSGVGKC RQVGISESGI DEAVQKLLAR GYKVGRIEQL ETSDQAKARG ANTIIPRKLV QVLTPSTASE GNIGPDAVHL LAIKEIKMEL
0401: QKCSTVYGFA FVDCAALRFW VGSISDDASC AALGALLMQV SPKEVLYDSK GLSREAQKAL RKYTLTGSTA VQLAPVPQVM GDTDAAGVRN IIESNGYFKG
0501: SSESWNCAVD GLNECDVALS ALGELINHLS RLKLEDVLKH GDIFPYQVYR GCLRIDGQTM VNLEIFNNSC DGGPSGTLYK YLDNCVSPTG KRLLRNWICH
0601: PLKDVESINK RLDVVEEFTA NSESMQITGQ YLHKLPDLER LLGRIKSSVR SSASVLPALL GKKVLKQRVK AFGQIVKGFR SGIDLLLALQ KESNMMSLLY
0701: KLCKLPILVG KSGLELFLSQ FEAAIDSDFP NYQNQDVTDE NAETLTILIE LFIERATQWS EVIHTISCLD VLRSFAIAAS LSAGSMARPV IFPESEATDQ
0801: NQKTKGPILK IQGLWHPFAV AADGQLPVPN DILLGEARRS SGSIHPRSLL LTGPNMGGKS TLLRATCLAV IFAQLGCYVP CESCEISLVD TIFTRLGASD
0901: RIMTGESTFL VECTETASVL QNATQDSLVI LDELGRGTST FDGYAIAYSV FRHLVEKVQC RMLFATHYHP LTKEFASHPR VTSKHMACAF KSRSDYQPRG
1001: CDQDLVFLYR LTEGACPESY GLQVALMAGI PNQVVETASG AAQAMKRSIG ENFKSSELRS EFSSLHEDWL KSLVGISRVA HNNAPIGEDD YDTLFCLWHE
1101: IKSSYCVPK

Arabidopsis Description

MSH7DNA mismatch repair protein MSH7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMV7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.