Factsheet for AT3G24495.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25338	Canola	plastid	81.7	82.36
CDY47171	Canola	mitochondrion, nucleus	80.79	81.98
Bra028373.1-P	Field mustard	mitochondrion, plastid	81.7	81.7
VIT_11s0016g04090.t01	Wine grape	nucleus	63.12	62.28
KRH39265	Soybean	mitochondrion	59.87	61.54
Solyc07g018350.2.1	Tomato	nucleus	44.73	61.16
KRH48416	Soybean	cytosol	59.6	58.55
GSMUA_Achr7P13290_001	Banana	cytosol, plastid	55.27	55.03
TraesCS3A01G117500.1	Wheat	mitochondrion, nucleus	51.13	46.4
TraesCS3B01G136600.1	Wheat	mitochondrion	50.95	46.24
Os01t0180600-01	Rice	mitochondrion, nucleus	50.95	46.16
TraesCS3D01G119400.1	Wheat	mitochondrion	50.77	46.07
KXG31683	Sorghum	mitochondrion, nucleus	50.68	45.65
Zm00001d039596_P004	Maize	nucleus	50.5	45.2
AT4G02070.1	Thale cress	plastid	29.04	24.32
AT3G18524.1	Thale cress	nucleus	18.39	21.77
AT4G17380.1	Thale cress	cytosol, nucleus, plasma membrane	15.06	21.09
AT4G25540.1	Thale cress	nucleus, plastid	19.75	20.26
AT3G20475.1	Thale cress	cytosol	12.26	16.85
AT5G54090.1	Thale cress	plastid	10.01	13.94
AT3G24320.1	Thale cress	mitochondrion	13.98	13.86
AT1G65070.2	Thale cress	plastid	9.83	12.44

Protein Annotations

Gene3D:1.10.1420.10	MapMan:14.7.1.4	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300	EntrezGene:822040
ProteinID:AEE76904.1	EMBL:AF009657	EMBL:AF193018	ArrayExpress:AT3G24495	EnsemblPlantsGene:AT3G24495	RefSeq:AT3G24495
TAIR:AT3G24495	RefSeq:AT3G24495-TAIR-G	EnsemblPlants:AT3G24495.1	TAIR:AT3G24495.1	Unigene:At.6244	ProteinID:BAB01996.1
ProteinID:CAA07685.1	InterPro:DNA_mismatch_repair_Msh2	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_core
InterPro:DNA_mismatch_repair_MutS_sf	InterPro:DNA_mmatch_repair_MutS_con_dom	GO:GO:0000166	GO:GO:0000404	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003684	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006298	GO:GO:0006950	GO:GO:0006974	GO:GO:0008094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0030983	GO:GO:0032300
GO:GO:0043570	InterPro:IPR016151	InterPro:IPR036678	Symbol:MSH7	InterPro:MutS_con_dom_sf	RefSeq:NP_850630.1
InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01624	PFAM:PF05188	PFAM:PF05192	PIRSF:PIRSF005813
PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281
ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF121	UniProt:Q9SMV7	SMART:SM00533	SMART:SM00534
SUPFAM:SSF48334	SUPFAM:SSF52540	SUPFAM:SSF53150	SUPFAM:SSF55271	UniParc:UPI000012F5FB	SEG:seg

Description

MSH7DNA mismatch repair protein MSH7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMV7]

Coordinates

chr3:-:8912343..8918146

Molecular Weight (calculated)

122276.0 Da

IEP (calculated)

7.106

GRAVY (calculated)

-0.253

Length

1109 amino acids

Sequence
(BLAST)

0001: MQRQRSILSF FQKPTAATTK GLVSGDAASG GGGSGGPRFN VKEGDAKGDA SVRFAVSKSV DEVRGTDTPP EKVPRRVLPS GFKPAESAGD ASSLFSNIMH
0101: KFVKVDDRDC SGERSREDVV PLNDSSLCMK ANDVIPQFRS NNGKTQERNH AFSFSGRAEL RSVEDIGVDG DVPGPETPGM RPRASRLKRV LEDEMTFKED
0201: KVPVLDSNKR LKMLQDPVCG EKKEVNEGTK FEWLESSRIR DANRRRPDDP LYDRKTLHIP PDVFKKMSAS QKQYWSVKSE YMDIVLFFKV GKFYELYELD
0301: AELGHKELDW KMTMSGVGKC RQVGISESGI DEAVQKLLAR GYKVGRIEQL ETSDQAKARG ANTIIPRKLV QVLTPSTASE GNIGPDAVHL LAIKEIKMEL
0401: QKCSTVYGFA FVDCAALRFW VGSISDDASC AALGALLMQV SPKEVLYDSK GLSREAQKAL RKYTLTGSTA VQLAPVPQVM GDTDAAGVRN IIESNGYFKG
0501: SSESWNCAVD GLNECDVALS ALGELINHLS RLKLEDVLKH GDIFPYQVYR GCLRIDGQTM VNLEIFNNSC DGGPSGTLYK YLDNCVSPTG KRLLRNWICH
0601: PLKDVESINK RLDVVEEFTA NSESMQITGQ YLHKLPDLER LLGRIKSSVR SSASVLPALL GKKVLKQRVK AFGQIVKGFR SGIDLLLALQ KESNMMSLLY
0701: KLCKLPILVG KSGLELFLSQ FEAAIDSDFP NYQNQDVTDE NAETLTILIE LFIERATQWS EVIHTISCLD VLRSFAIAAS LSAGSMARPV IFPESEATDQ
0801: NQKTKGPILK IQGLWHPFAV AADGQLPVPN DILLGEARRS SGSIHPRSLL LTGPNMGGKS TLLRATCLAV IFAQLGCYVP CESCEISLVD TIFTRLGASD
0901: RIMTGESTFL VECTETASVL QNATQDSLVI LDELGRGTST FDGYAIAYSV FRHLVEKVQC RMLFATHYHP LTKEFASHPR VTSKHMACAF KSRSDYQPRG
1001: CDQDLVFLYR LTEGACPESY GLQVALMAGI PNQVVETASG AAQAMKRSIG ENFKSSELRS EFSSLHEDWL KSLVGISRVA HNNAPIGEDD YDTLFCLWHE
1101: IKSSYCVPK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.