Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G352400.1 | Wheat | cytosol | 93.24 | 83.57 |
| TraesCS2B01G372400.1 | Wheat | mitochondrion, plastid | 92.78 | 76.92 |
| TraesCS2B01G372300.1 | Wheat | plastid | 92.78 | 73.37 |
| EES11671 | Sorghum | plastid | 78.35 | 62.18 |
| KRH35336 | Soybean | cytosol | 27.26 | 56.0 |
| Zm00001d026647_P005 | Maize | nucleus | 76.29 | 49.78 |
| VIT_16s0100g01310.t01 | Wine grape | plastid | 57.5 | 45.18 |
| KRG91481 | Soybean | plastid | 54.98 | 44.86 |
| AT4G25540.1 | Thale cress | nucleus, plastid | 54.18 | 43.76 |
| CDY50199 | Canola | plastid | 53.15 | 43.16 |
| Solyc03g025890.1.1 | Tomato | nucleus | 55.1 | 43.06 |
| CDX92716 | Canola | plastid | 53.84 | 43.04 |
| Bra019156.1-P | Field mustard | plastid | 52.92 | 42.62 |
| HORVU1Hr1G066830.9 | Barley | cytosol | 17.07 | 23.58 |
| VIT_00s0485g00020.t01 | Wine grape | mitochondrion, plastid | 12.37 | 22.98 |
| VIT_00s0388g00030.t01 | Wine grape | plastid | 12.49 | 22.24 |
| HORVU2Hr1G031870.17 | Barley | cytosol | 20.16 | 21.36 |
| HORVU5Hr1G061020.11 | Barley | endoplasmic reticulum, golgi, plasma membrane | 25.09 | 21.18 |
| HORVU1Hr1G030930.22 | Barley | plastid | 21.42 | 18.76 |
| HORVU6Hr1G000990.1 | Barley | cytosol | 2.29 | 13.07 |
| HORVU6Hr1G001030.1 | Barley | cytosol | 2.29 | 13.07 |
| HORVU2Hr1G087660.5 | Barley | plastid | 14.89 | 11.08 |
| HORVU2Hr1G118740.5 | Barley | plastid | 10.42 | 10.42 |
| HORVU1Hr1G047640.7 | Barley | plastid | 10.42 | 10.42 |
| EES13125 | Sorghum | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.1420.10 | MapMan:14.7.1.2 | Gene3D:3.30.420.110 | Gene3D:3.40.50.300 | InterPro:DNA_mismatch_repair_MutS/MSH | InterPro:DNA_mismatch_repair_MutS_C |
| InterPro:DNA_mismatch_repair_MutS_clamp | InterPro:DNA_mismatch_repair_MutS_core | InterPro:DNA_mismatch_repair_MutS_sf | InterPro:DNA_mmatch_repair_MutS_con_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003684 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006298 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0030983 | EnsemblPlantsGene:HORVU2Hr1G085940 | EnsemblPlants:HORVU2Hr1G085940.21 | InterPro:IPR036678 | InterPro:MutS_con_dom_sf | InterPro:P-loop_NTPase |
| PFAM:PF00488 | PFAM:PF05188 | PFAM:PF05190 | PFAM:PF05192 | PIRSF:PIRSF037677 | ScanProsite:PS00486 |
| PANTHER:PTHR11361 | PANTHER:PTHR11361:SF122 | SMART:SM00533 | SMART:SM00534 | SUPFAM:SSF48334 | SUPFAM:SSF52540 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:620782806..620788685
Molecular Weight (calculated)
95714.3 Da
IEP (calculated)
6.220
GRAVY (calculated)
-0.061
Length
873 amino acids
Sequence
(BLAST)
(BLAST)
001: XIEAGAGELE GGGAPEEGSR YLVCVVDKEL DAVGREGFEV KVGVVAIEVS TGEVVHGEFM DGASRSGLEA VLLGLAPVEV ILGTPLSFAT EKLMRAYAGP
101: VSNVRVECTS RDCFSEGGAL AELMSLFEKS EAIKINEEDS NLHGMEGVMA MPELVAQAMA LSVRYLKGFG MERLICFGSS FRPFTANTEM SLSANALQQL
201: EVLKNNSDGS IEGSLFQTMN NTCTAFGSRL FRHWLVLFLQ LTHPLCDRNL ICARHDAISE ISESMGSRQD PVHIRQDEED GCCAASVRSD LSTILSSVLT
301: MLGRSLDSQR GITRIFHCKA TAKEFFGVIQ AILEAGKQLR KLVLEDTENV SSQHRTVHTS LLRRLISTAS SSAVLANAVK LLSCLDKDAA AQGDMINLFI
401: SSADQFPEVA EGHVTVEMAK QKLDLLIVGY RKQLGMRSLE YKTVSGTAYL IELPVDRKVP SNWLKVNSTK KAIRYHTPEV LKNLDNLLLA KEELAVICRK
501: TWHKFLMDFD KYYAQFQATV ESLAALDCLY SLATLAKQKN YVQPNFVPEN EASQIHIKDG RHPVLESLLG VNFVPNDTDL HVDGQYCQIV TGPNMGGKSC
601: YIRQVALITI MAQVGSFVPA SSARLHVVDG IYTRMGASDS IQQGTSTFYE EMNEASNILQ SCSSRSLVII DELGRGTSTH DGVAIAYATL HYLLKVKKCI
701: VIFVTHYPKI LDIRSEFEGS VGAYHVSYLS TRKLLQTTDE KMGISTETED LGEITFLYKL VAGASDRSFG LNVALLAQLP LRCIKRASVM AAKLQEEMSK
801: RDGNKLMDEP SRDGQRESSP KFGLLSTEPH QGLMEACRRI LRDMRSAQSN NDIANTLSCL KSAHEIALKM ING
101: VSNVRVECTS RDCFSEGGAL AELMSLFEKS EAIKINEEDS NLHGMEGVMA MPELVAQAMA LSVRYLKGFG MERLICFGSS FRPFTANTEM SLSANALQQL
201: EVLKNNSDGS IEGSLFQTMN NTCTAFGSRL FRHWLVLFLQ LTHPLCDRNL ICARHDAISE ISESMGSRQD PVHIRQDEED GCCAASVRSD LSTILSSVLT
301: MLGRSLDSQR GITRIFHCKA TAKEFFGVIQ AILEAGKQLR KLVLEDTENV SSQHRTVHTS LLRRLISTAS SSAVLANAVK LLSCLDKDAA AQGDMINLFI
401: SSADQFPEVA EGHVTVEMAK QKLDLLIVGY RKQLGMRSLE YKTVSGTAYL IELPVDRKVP SNWLKVNSTK KAIRYHTPEV LKNLDNLLLA KEELAVICRK
501: TWHKFLMDFD KYYAQFQATV ESLAALDCLY SLATLAKQKN YVQPNFVPEN EASQIHIKDG RHPVLESLLG VNFVPNDTDL HVDGQYCQIV TGPNMGGKSC
601: YIRQVALITI MAQVGSFVPA SSARLHVVDG IYTRMGASDS IQQGTSTFYE EMNEASNILQ SCSSRSLVII DELGRGTSTH DGVAIAYATL HYLLKVKKCI
701: VIFVTHYPKI LDIRSEFEGS VGAYHVSYLS TRKLLQTTDE KMGISTETED LGEITFLYKL VAGASDRSFG LNVALLAQLP LRCIKRASVM AAKLQEEMSK
801: RDGNKLMDEP SRDGQRESSP KFGLLSTEPH QGLMEACRRI LRDMRSAQSN NDIANTLSCL KSAHEIALKM ING
0001: MGKQKQQTIS RFFAPKPKSP THEPNPVAES STPPPKISAT VSFSPSKRKL LSDHLAAASP KKPKLSPHTQ NPVPDPNLHQ RFLQRFLEPS PEEYVPETSS
0101: SRKYTPLEQQ VVELKSKYPD VVLMVEVGYR YRFFGEDAEI AARVLGIYAH MDHNFMTASV PTFRLNFHVR RLVNAGYKIG VVKQTETAAI KSHGANRTGP
0201: FFRGLSALYT KATLEAAEDI SGGCGGEEGF GSQSNFLVCV VDERVKSETL GCGIEMSFDV RVGVVGVEIS TGEVVYEEFN DNFMRSGLEA VILSLSPAEL
0301: LLGQPLSQQT EKFLVAHAGP TSNVRVERAS LDCFSNGNAV DEVISLCEKI SAGNLEDDKE MKLEAAEKGM SCLTVHTIMN MPHLTVQALA LTFCHLKQFG
0401: FERILYQGAS FRSLSSNTEM TLSANTLQQL EVVKNNSDGS ESGSLFHNMN HTLTVYGSRL LRHWVTHPLC DRNLISARLD AVSEISACMG SHSSSQLSSE
0501: LVEEGSERAI VSPEFYLVLS SVLTAMSRSS DIQRGITRIF HRTAKATEFI AVMEAILLAG KQIQRLGIKQ DSEMRSMQSA TVRSTLLRKL ISVISSPVVV
0601: DNAGKLLSAL NKEAAVRGDL LDILITSSDQ FPELAEARQA VLVIREKLDS SIASFRKKLA IRNLEFLQVS GITHLIELPV DSKVPMNWVK VNSTKKTIRY
0701: HPPEIVAGLD ELALATEHLA IVNRASWDSF LKSFSRYYTD FKAAVQALAA LDCLHSLSTL SRNKNYVRPE FVDDCEPVEI NIQSGRHPVL ETILQDNFVP
0801: NDTILHAEGE YCQIITGPNM GGKSCYIRQV ALISIMAQVG SFVPASFAKL HVLDGVFTRM GASDSIQHGR STFLEELSEA SHIIRTCSSR SLVILDELGR
0901: GTSTHDGVAI AYATLQHLLA EKRCLVLFVT HYPEIAEISN GFPGSVGTYH VSYLTLQKDK GSYDHDDVTY LYKLVRGLCS RSFGFKVAQL AQIPPSCIRR
1001: AISMAAKLEA EVRARERNTR MGEPEGHEEP RGAEESISAL GDLFADLKFA LSEEDPWKAF EFLKHAWKIA GKIRLKPTCS F
0101: SRKYTPLEQQ VVELKSKYPD VVLMVEVGYR YRFFGEDAEI AARVLGIYAH MDHNFMTASV PTFRLNFHVR RLVNAGYKIG VVKQTETAAI KSHGANRTGP
0201: FFRGLSALYT KATLEAAEDI SGGCGGEEGF GSQSNFLVCV VDERVKSETL GCGIEMSFDV RVGVVGVEIS TGEVVYEEFN DNFMRSGLEA VILSLSPAEL
0301: LLGQPLSQQT EKFLVAHAGP TSNVRVERAS LDCFSNGNAV DEVISLCEKI SAGNLEDDKE MKLEAAEKGM SCLTVHTIMN MPHLTVQALA LTFCHLKQFG
0401: FERILYQGAS FRSLSSNTEM TLSANTLQQL EVVKNNSDGS ESGSLFHNMN HTLTVYGSRL LRHWVTHPLC DRNLISARLD AVSEISACMG SHSSSQLSSE
0501: LVEEGSERAI VSPEFYLVLS SVLTAMSRSS DIQRGITRIF HRTAKATEFI AVMEAILLAG KQIQRLGIKQ DSEMRSMQSA TVRSTLLRKL ISVISSPVVV
0601: DNAGKLLSAL NKEAAVRGDL LDILITSSDQ FPELAEARQA VLVIREKLDS SIASFRKKLA IRNLEFLQVS GITHLIELPV DSKVPMNWVK VNSTKKTIRY
0701: HPPEIVAGLD ELALATEHLA IVNRASWDSF LKSFSRYYTD FKAAVQALAA LDCLHSLSTL SRNKNYVRPE FVDDCEPVEI NIQSGRHPVL ETILQDNFVP
0801: NDTILHAEGE YCQIITGPNM GGKSCYIRQV ALISIMAQVG SFVPASFAKL HVLDGVFTRM GASDSIQHGR STFLEELSEA SHIIRTCSSR SLVILDELGR
0901: GTSTHDGVAI AYATLQHLLA EKRCLVLFVT HYPEIAEISN GFPGSVGTYH VSYLTLQKDK GSYDHDDVTY LYKLVRGLCS RSFGFKVAQL AQIPPSCIRR
1001: AISMAAKLEA EVRARERNTR MGEPEGHEEP RGAEESISAL GDLFADLKFA LSEEDPWKAF EFLKHAWKIA GKIRLKPTCS F
Arabidopsis Description
MSH3DNA mismatch repair protein MSH3 [Source:UniProtKB/Swiss-Prot;Acc:O65607]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.