CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G352400.1	Wheat	cytosol	71.55	80.8
TraesCS2B01G372400.1	Wheat	mitochondrion, plastid	76.27	79.68
TraesCS2B01G372300.1	Wheat	plastid	78.82	78.53
HORVU2Hr1G085940.21	Barley	cytosol	62.18	78.35
Zm00001d026647_P005	Maize	nucleus	91.82	75.49
VIT_16s0100g01310.t01	Wine grape	plastid	55.91	55.36
KRH35336	Soybean	cytosol	21.36	55.29
KRG91481	Soybean	plastid	53.73	55.23
CDY50199	Canola	plastid	52.82	54.05
AT4G25540.1	Thale cress	nucleus, plastid	53.09	54.02
CDX92716	Canola	plastid	53.36	53.75
Bra019156.1-P	Field mustard	plastid	52.64	53.41
Solyc03g025890.1.1	Tomato	nucleus	54.0	53.18
VIT_00s0485g00020.t01	Wine grape	mitochondrion, plastid	20.55	48.09
VIT_00s0388g00030.t01	Wine grape	plastid	20.55	46.12
EER99643	Sorghum	nucleus	19.45	22.72
EER99382	Sorghum	cytosol	16.18	22.17
OQU78247	Sorghum	cytosol	14.82	20.76
KXG35601	Sorghum	mitochondrion, nucleus, plastid	24.18	20.4
KXG31683	Sorghum	mitochondrion, nucleus	18.91	16.9
KXG26672	Sorghum	mitochondrion, nucleus	13.64	13.26
EES11666	Sorghum	plastid	9.45	11.4
OQU91528	Sorghum	plastid	8.55	11.31
EES13125	Sorghum	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.1420.10	MapMan:14.7.1.2	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300	UniProt:C5YAM8
ncoils:Coil	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS/MSH	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_clamp
InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	InterPro:DNA_mmatch_repair_MutS_con_dom	EnsemblPlants:EES11671	ProteinID:EES11671	ProteinID:EES11671.2
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006298	GO:GO:0006950
GO:GO:0006974	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030983	InterPro:IPR016151
InterPro:IPR036678	InterPro:MutS_con_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01624	PFAM:PF05188
PFAM:PF05190	PFAM:PF05192	PIRSF:PIRSF037677	ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF122
SMART:SM00533	SMART:SM00534	EnsemblPlantsGene:SORBI_3006G271900	SUPFAM:SSF48334	SUPFAM:SSF52540	SUPFAM:SSF55271
UniParc:UPI0003C71BE1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:60363029..60370792

Molecular Weight (calculated)

119286.0 Da

IEP (calculated)

7.370

GRAVY (calculated)

-0.085

Length

1100 amino acids

Sequence
(BLAST)

0001: MGKPKQQVLS RFFSPKPGPA PAAADPPPPP PPPPNPKPSA AHPPISTVAS FSPAKRARAL SLSPKPPAAK RPNPTPPPSR DAVRRRLLEP LDPPPPRSLK
0101: PTAPGGGGKG YTPLEQQVVD LKARHPDVLL MVEVGYRFRF FGEDAAVAAA VLGIVAHPDR SFLTASIPTF RLGFHVRRLV AAGHKVGVVR QTETAAIKAA
0201: AGGAGGAPFA RGLSAVYTRA TIEAAAGELE GGGAATPEEG SSYLVCVVDK EVEAAGREGL QVKVGMVAIE VSTGEVIHGE FLDSDSRSGL EAVLLGLAPV
0301: EVILGTPLSF ATDKIMKAYL GPTSNVRVER VSCECFGEGG ALAELITLFE KSLDNASRAE DDRKLIQTND DNNNLHGIEG IMAMPELVVQ ALALSVRYLK
0401: GFGMERIICF GSSFRPFSAG TEFSLSANAL QQLEVFRNNS DGATEGSLFQ TMNNTCTSFG SRLFRNWLTH PLCDRHLICA RHDAVSEIFE SMGSQHSVNN
0501: LQDGGDRSCT ASARSDLCTV LSSVLALLGR SLDIQRGITR VFHCKATAKE FVGVIQSILT VGKQLQKLVL EDIGTVSSQH KPVHSSLLRR LISTASSPTV
0601: LNSAVKLLSC LNKDAADQGD MLNLFIASVD QFPEVTEGHV NVKMADHKLD LLIVEYRKQL GMRNLEFKTV AGTTHLIELP VDRRVPSNWI KINSTKKAIR
0701: YHTPEILKNL DNLLLAKEEL AVICRSMWHK FLTDFGEYYA QFQAVVESLA ALDCLYSFAV LAKQNNYIRP IFVHDNEPSQ IHIKDGRHPV LESLLGNNFV
0801: PNDTELHTDG EYCQIVTGPN MGGKSCYIRQ VALITMMAQV GSFVPASSAM LHVVDGIYTR MGASDSIQQG TSTFHEEMNE ASNILRNCSA RSLVIIDELG
0901: RGTSTHDGVA IAYATLHYLL KEKKCIVIFV THYPKILDIQ REFEGSVGAY HVSYLATMKL LEVTDKPVET SPEANNLGEI IFLYKLVAGA SDRSFGLNVA
1001: LLAQLPSRCI KRASVMAAKL QEELSAREEN KLRRTTDAPT VDGPSESSAE VGLLCSQPYQ QLAETCRKIL LNITLAQSNN DVVDTLPSLK NAQEIARKMI

Best Arabidopsis Sequence Match ( AT4G25540.1 )
(BLAST)

0001: MGKQKQQTIS RFFAPKPKSP THEPNPVAES STPPPKISAT VSFSPSKRKL LSDHLAAASP KKPKLSPHTQ NPVPDPNLHQ RFLQRFLEPS PEEYVPETSS
0101: SRKYTPLEQQ VVELKSKYPD VVLMVEVGYR YRFFGEDAEI AARVLGIYAH MDHNFMTASV PTFRLNFHVR RLVNAGYKIG VVKQTETAAI KSHGANRTGP
0201: FFRGLSALYT KATLEAAEDI SGGCGGEEGF GSQSNFLVCV VDERVKSETL GCGIEMSFDV RVGVVGVEIS TGEVVYEEFN DNFMRSGLEA VILSLSPAEL
0301: LLGQPLSQQT EKFLVAHAGP TSNVRVERAS LDCFSNGNAV DEVISLCEKI SAGNLEDDKE MKLEAAEKGM SCLTVHTIMN MPHLTVQALA LTFCHLKQFG
0401: FERILYQGAS FRSLSSNTEM TLSANTLQQL EVVKNNSDGS ESGSLFHNMN HTLTVYGSRL LRHWVTHPLC DRNLISARLD AVSEISACMG SHSSSQLSSE
0501: LVEEGSERAI VSPEFYLVLS SVLTAMSRSS DIQRGITRIF HRTAKATEFI AVMEAILLAG KQIQRLGIKQ DSEMRSMQSA TVRSTLLRKL ISVISSPVVV
0601: DNAGKLLSAL NKEAAVRGDL LDILITSSDQ FPELAEARQA VLVIREKLDS SIASFRKKLA IRNLEFLQVS GITHLIELPV DSKVPMNWVK VNSTKKTIRY
0701: HPPEIVAGLD ELALATEHLA IVNRASWDSF LKSFSRYYTD FKAAVQALAA LDCLHSLSTL SRNKNYVRPE FVDDCEPVEI NIQSGRHPVL ETILQDNFVP
0801: NDTILHAEGE YCQIITGPNM GGKSCYIRQV ALISIMAQVG SFVPASFAKL HVLDGVFTRM GASDSIQHGR STFLEELSEA SHIIRTCSSR SLVILDELGR
0901: GTSTHDGVAI AYATLQHLLA EKRCLVLFVT HYPEIAEISN GFPGSVGTYH VSYLTLQKDK GSYDHDDVTY LYKLVRGLCS RSFGFKVAQL AQIPPSCIRR
1001: AISMAAKLEA EVRARERNTR MGEPEGHEEP RGAEESISAL GDLFADLKFA LSEEDPWKAF EFLKHAWKIA GKIRLKPTCS F

Arabidopsis Description

MSH3DNA mismatch repair protein MSH3 [Source:UniProtKB/Swiss-Prot;Acc:O65607]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.