Factsheet for TraesCS4D01G265800.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
peroxisome 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	peroxisome, plastid, secretory
iPSORT:	secretory
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G265900.1	Wheat	vacuole	93.91	93.91
HORVU6Hr1G042330.1	Barley	cytosol	68.15	89.84
TraesCS4A01G039600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	84.38	88.89
Zm00001d024281_P001	Maize	extracellular	81.95	80.8
HORVU4Hr1G071450.1	Barley	mitochondrion	91.89	79.75
Os09t0368500-01	Rice	golgi	75.25	78.27
Os09t0368200-00	Rice	golgi, vacuole	77.69	77.22
TraesCS7D01G524900.1	Wheat	plasma membrane	72.62	71.89
Os03t0193400-00	Rice	nucleus, peroxisome	29.41	71.78
OQU80059	Sorghum	peroxisome	81.14	71.43
TraesCS7D01G375700.1	Wheat	extracellular	71.6	70.18
GSMUA_Achr6P24910_001	Banana	endoplasmic reticulum	37.12	67.28
VIT_01s0127g00770.t01	Wine grape	cytosol	11.56	62.64
VIT_01s0127g00800.t01	Wine grape	extracellular, plasma membrane, vacuole	61.26	61.01
VIT_01s0127g00780.t01	Wine grape	golgi, vacuole	59.43	58.02
VIT_01s0127g00750.t01	Wine grape	golgi, vacuole	55.58	56.03
KRH39911	Soybean	plasma membrane	44.02	46.67
KRH13982	Soybean	plasma membrane	45.23	44.51
CDX70516	Canola	extracellular	42.19	44.16
AT5G13700.1	Thale cress	extracellular	42.19	44.07
KRH32977	Soybean	plasma membrane	44.62	44.0
Bra006210.1-P	Field mustard	extracellular	41.99	43.95
CDX78534	Canola	extracellular	42.19	43.33
Solyc01g087590.2.1	Tomato	vacuole	43.2	42.86
PGSC0003DMT400017667	Potato	vacuole	42.8	42.63
KRH69303	Soybean	vacuole	30.63	39.22
TraesCS2D01G467300.1	Wheat	peroxisome, plastid	22.72	23.14
TraesCS2D01G549200.1	Wheat	peroxisome, plastid	22.31	22.36
TraesCS2D01G549300.1	Wheat	mitochondrion, plastid	23.73	21.67
TraesCS3D01G251100.1	Wheat	golgi	21.5	21.59
TraesCS7D01G303200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	23.94	15.55
TraesCS2D01G404400.1	Wheat	plastid	24.14	14.22
TraesCS6D01G297500.1	Wheat	plastid	25.15	14.14
TraesCS6D01G389200.1	Wheat	nucleus	26.17	6.97

Protein Annotations

EnsemblPlants:TraesCS4D01G265800.1	EnsemblPlantsGene:TraesCS4D01G265800	Gene3D:3.50.50.60	Gene3D:3.90.660.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:Amino_oxidase	InterPro:FAD/NAD-bd_sf
InterPro:Flavin_amine_oxidase	InterPro:IPR036188	PANTHER:PTHR10742	PANTHER:PTHR10742:SF313	PFAM:PF01593	PRINTS:PR00757
SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF51905	SUPFAM:SSF54373	MapMan:8.5.2.1	:

Description

No Description!

Coordinates

chr4D:-:435658778..435661371

Molecular Weight (calculated)

55357.8 Da

IEP (calculated)

7.013

GRAVY (calculated)

-0.313

Length

493 amino acids

Sequence
(BLAST)

001: MTPTATTALV LALTLAHHAS LAAAAGPRVI IVGAGMSGIS AGKRLSEAGI TDLVILEATD HLGGRMRKHN FGGVSVEIGA NWVEGVNGGK MNPIWPLVNS
101: TLKLRNFRSD FDGLAENVYK ETGGVYDRAY VQKRLDRANE VEEGGAKLSA KLRPSGQDDM SILAMQRLNN HLPNGPASPV DMILDYFKHD YEFAEPPRVT
201: SLQNVVPLAT FRDFGDDVYF VADKRGYEAV VHHLAGQYLE ADKARNIVDP RLQLNKVVRE ISYSGSGVTV RTEDDKVYKA DYVMVSTSVG VLQSDLIQFK
301: PRLPAWKVLS IYQFDMAVYT KIFVKFPRKF WPEGKGREFF LYASSRRGYY GVWQELEAPY PDANVLLVTV TDEESRRIEQ QSDNQTKAEI VEVLRSMFSG
401: EDVPDATDIL VPRWWSDRFY RGTFSNWPIG VNRYEYDQLR APVGRVYFTG EHTSEHYNGY VHGAYLSGID SADILIKCAH KRMCKYHIPG KFD

Best Arabidopsis Sequence Match ( AT5G13700.1 )
(BLAST)

001: MSTASVIIIG AGISGISAAK VLVENGVEDV LILEATDRIG GRIHKQNFGD VPVELGAGWI AGVGGKESNP VWELASRFNL RTCFSDYTNA RFNIYDRSGK
101: IFPTGIASDS YKKAVDSAIL KLKSLEAQCS GQVAEEAPSS PKTPIELAID FILHDFEMAE VEPISTYVDF GEREFLVADE RGYECLLYKM AEEFLVTSHG
201: NILDYRLKLN QVVREVQQSR NGVVVKTEDG SVYEANYVIV SASIGVLQSD LLSFQPLLPR WKTEAIQKCD VMVYTKIFLK FPQCFWPCGP GQEFFIYAHE
301: QRGYFTFWQH MENAYPGSNI LVVTLTNEQS KRVEAQSDQE TMKEAMSVLR DMFGATIPYA TDILVPRWWN NRFQRGSYSN YPMISDNQLL QNIKAPVGRI
401: FFTGEHTSEK FSGYVHGGYL AGIDTSKSLL EEMKQSLLLQ PLLAFTESLT LTHQKPNNSQ IYTNVKFISG TS

Arabidopsis Description

PAO1Polyamine oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNA2]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.