Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G405500.2 | Wheat | nucleus | 96.98 | 96.98 |
| TraesCS6B01G449900.1 | Wheat | nucleus | 95.95 | 96.26 |
| HORVU6Hr1G092910.1 | Barley | nucleus | 91.41 | 93.12 |
| Os10t0532150-00 | Rice | cytosol, nucleus, plastid | 10.48 | 78.23 |
| Os10t0532100-01 | Rice | nucleus | 45.36 | 69.54 |
| EER94594 | Sorghum | nucleus | 63.28 | 65.15 |
| Zm00001d029714_P001 | Maize | extracellular | 62.85 | 64.17 |
| GSMUA_Achr2P09900_001 | Banana | cytosol | 42.82 | 56.04 |
| PGSC0003DMT400009649 | Potato | cytosol | 36.61 | 52.31 |
| CDY22771 | Canola | nucleus | 38.07 | 44.71 |
| CDY42542 | Canola | nucleus | 38.28 | 44.51 |
| Bra040571.1-P | Field mustard | nucleus | 37.8 | 44.33 |
| AT4G16310.4 | Thale cress | nucleus | 38.17 | 43.43 |
| KRH17390 | Soybean | nucleus | 43.41 | 42.45 |
| KRH05909 | Soybean | nucleus | 43.41 | 42.16 |
| Solyc04g081100.2.1 | Tomato | nucleus | 42.33 | 37.73 |
| TraesCS2D01G467300.1 | Wheat | peroxisome, plastid | 9.07 | 34.71 |
| TraesCS2D01G549200.1 | Wheat | peroxisome, plastid | 9.02 | 33.94 |
| TraesCS7D01G303200.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 12.53 | 30.57 |
| TraesCS2D01G549300.1 | Wheat | mitochondrion, plastid | 8.86 | 30.37 |
| TraesCS2D01G404400.1 | Wheat | plastid | 13.34 | 29.51 |
| TraesCS6D01G297500.1 | Wheat | plastid | 13.28 | 28.05 |
| TraesCS7D01G524900.1 | Wheat | plasma membrane | 7.07 | 26.31 |
| TraesCS4D01G265800.1 | Wheat | unclear | 6.97 | 26.17 |
| TraesCS3D01G251100.1 | Wheat | golgi | 6.91 | 26.07 |
| TraesCS7D01G375700.1 | Wheat | extracellular | 6.8 | 25.05 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:12.3.3.8.2 | Gene3D:3.50.50.60 | Gene3D:3.90.660.10 | InterPro:Amino_oxidase | ncoils:Coil |
| InterPro:FAD/NAD-bd_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:Homeobox-like_sf |
| InterPro:IPR007526 | InterPro:IPR035441 | InterPro:IPR036188 | InterPro:IPR036388 | PFAM:PF01593 | PFAM:PF04433 |
| PRINTS:PR00419 | PFscan:PS50934 | PANTHER:PTHR10742 | PANTHER:PTHR10742:SF354 | SUPFAM:SSF46689 | SUPFAM:SSF47676 |
| SUPFAM:SSF51905 | SUPFAM:SSF54373 | InterPro:SWIRM | InterPro:TFIIS/LEDGF_dom_sf | EnsemblPlantsGene:TraesCS6D01G389200 | EnsemblPlants:TraesCS6D01G389200.1 |
| InterPro:WH-like_DNA-bd_sf | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6D:-:464943853..464951043
Molecular Weight (calculated)
199349.0 Da
IEP (calculated)
5.944
GRAVY (calculated)
-0.478
Length
1852 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDDTLANIRK KLKRLKKGKD EDDAVDAPAV PDGGEAVAVA AGPEDLPGGG DVEDMGEGVA DEGGDLEAVA NVVPGEDGLK GPGVDLGLGD GLKGPGGDLG
0101: LGDSLSVLFR KPGRKTRQQA SKDEEAEGVE AADSQAEEAL NGGSGGLASD ETAKGTKKRR RRRTKAEMEE MRAALAAENY AKAMAGDASP RRSKARPKAA
0201: YSDRRSRAAA RRAVGESPVG ELAAPGPPPD SERKPDEKEE AVDKEEAADD GLSLGETLLQ DMETSRIVED GSRNSSDGAS HCVEVPARAD NCIALNPCSG
0301: GEPAEKASYS AANASTDGVS DARTCSETLA EDINADAGFS QDKPPAPTIK RKPSRKPKEA PKKPVRRKEL PSVSADAKPV EIAESDASSK QRRRKNKFLL
0401: ARSTTVQSNS SLDNKAGSTG DVKYGNIKPN AAVPTEESLD QPAAYGVRGS CAAKDSRASH NMAASAKEID SIDVAAPSNF EDMENASKVK RLTRNTRKRK
0501: HGDMAYEGDA DWETLMHEQG GLFSNPSAGF ADQSVKPKDK IKALEVLENR GVAAVSAGLM AEAVSPMEKI KFKDVLKRKG GLKDYLECRN MILSCWNKDV
0601: KHLLDLADCG LSNAPMEDDS PRQTLIRDVY CFLDQNGYIN AGIASGKATK GHGTLCSEVV EVAKLNELPK MEPVRVEGDI VAVSLQNKDH DYGALGPLTE
0701: ESKENNVPDA HCDAQELIPH SQSTGQAFEE KNLDVSTEGG DALLPPINIT SVGNTEGPSL DKPEAAVIEH PGNNCEVNHK VDSGGHCKKI IIVGAGPAGL
0801: TAARHLQRQG FAVTVLEARD RIGGRVYTDR TSLSVPVDLG ASIITGVEAD IATERRADPS SLICSQLGLE LTVLKSACPL YDVVTGNKVP DELDDELESE
0901: YNGLLDEMEQ LFEQNGESAL GLSLEDGLEY TLKKKRAAHA ISSVGHDDQL ISMNSRGGAD ISKNASTEKE IAHCGEDGKI DVLSPLERRV MNWHFAHLEY
1001: GCAAMLKSVS LPYWNQDDVY GGFGGPHCMI KGGYGAVLES LAEGLDVQLN HVVTEVMYRP EESDASGING KTVKVSTSNG AEFVGDAVLI TVPLGCLKAH
1101: AIKFSPSLPD WKTSSIDRLG FGVLNKIVLE FPEVFWDENV DYFGATAEQT DLRGQCFMFW NLKKTVGAPV LIALLVGKAA IDGQSISSDA HVSHAMVVLR
1201: KLFTDAAVPD PVASVVTNWG LDPFSRGAYS YVAVGASGQD YDIIGRPVAN CLFFAGEATC KEHPDTVGGA ILSGLREAVR IIDLVHSGKD YVAEVEALQT
1301: YQVQSDSERN EVRDMSNRLE ARELSTALCK NSSDASYAVA SKESVLQEMF FSANTTPGRL HLAKELLKLP PDALKSFAGS KEGLTKLNSW ILDSLGKNAT
1401: QLLRHCVRLL LLVSTDLVAV RLSGIGRTVK EKVCVHTSRD IRAIARQLVS MWIEVFRKEK GSNGALKMLR RLPSVESSKT RSKDLHSGMR TSHVPNEAGA
1501: QRVRSAGSHS PHRTGKKPDK IVKLSSIMAT KSDGSSLRSQ KQHHDPEPKG DQGMVMSEEE AAVFAAAEAA RVAAIAAAQA YASAEAVISK PRELPKIPSF
1601: GDFARRDHHL DESDTRKKMT SDKHGRLECI SEIDSRNGKT KNSSAEHANC PDVDSSKMTV DNCTQRSYSN EKACLINIKD NSAESGAVDS RFTRAWVDTD
1701: AVSIDGVKHP IAIERWQAQA MEADKEFYSR IRIPMEEGSG SQKQTCKSSA SQVAESKPAS EGQSRGVEHI KQGLIAFIST LLMPLYKSKK IDREAYKTMM
1801: RKAVTKIIDA CTEGEKLMTA NEFLDFRRKT KIQTFVDKLV ERHWHVAPAP KS
0101: LGDSLSVLFR KPGRKTRQQA SKDEEAEGVE AADSQAEEAL NGGSGGLASD ETAKGTKKRR RRRTKAEMEE MRAALAAENY AKAMAGDASP RRSKARPKAA
0201: YSDRRSRAAA RRAVGESPVG ELAAPGPPPD SERKPDEKEE AVDKEEAADD GLSLGETLLQ DMETSRIVED GSRNSSDGAS HCVEVPARAD NCIALNPCSG
0301: GEPAEKASYS AANASTDGVS DARTCSETLA EDINADAGFS QDKPPAPTIK RKPSRKPKEA PKKPVRRKEL PSVSADAKPV EIAESDASSK QRRRKNKFLL
0401: ARSTTVQSNS SLDNKAGSTG DVKYGNIKPN AAVPTEESLD QPAAYGVRGS CAAKDSRASH NMAASAKEID SIDVAAPSNF EDMENASKVK RLTRNTRKRK
0501: HGDMAYEGDA DWETLMHEQG GLFSNPSAGF ADQSVKPKDK IKALEVLENR GVAAVSAGLM AEAVSPMEKI KFKDVLKRKG GLKDYLECRN MILSCWNKDV
0601: KHLLDLADCG LSNAPMEDDS PRQTLIRDVY CFLDQNGYIN AGIASGKATK GHGTLCSEVV EVAKLNELPK MEPVRVEGDI VAVSLQNKDH DYGALGPLTE
0701: ESKENNVPDA HCDAQELIPH SQSTGQAFEE KNLDVSTEGG DALLPPINIT SVGNTEGPSL DKPEAAVIEH PGNNCEVNHK VDSGGHCKKI IIVGAGPAGL
0801: TAARHLQRQG FAVTVLEARD RIGGRVYTDR TSLSVPVDLG ASIITGVEAD IATERRADPS SLICSQLGLE LTVLKSACPL YDVVTGNKVP DELDDELESE
0901: YNGLLDEMEQ LFEQNGESAL GLSLEDGLEY TLKKKRAAHA ISSVGHDDQL ISMNSRGGAD ISKNASTEKE IAHCGEDGKI DVLSPLERRV MNWHFAHLEY
1001: GCAAMLKSVS LPYWNQDDVY GGFGGPHCMI KGGYGAVLES LAEGLDVQLN HVVTEVMYRP EESDASGING KTVKVSTSNG AEFVGDAVLI TVPLGCLKAH
1101: AIKFSPSLPD WKTSSIDRLG FGVLNKIVLE FPEVFWDENV DYFGATAEQT DLRGQCFMFW NLKKTVGAPV LIALLVGKAA IDGQSISSDA HVSHAMVVLR
1201: KLFTDAAVPD PVASVVTNWG LDPFSRGAYS YVAVGASGQD YDIIGRPVAN CLFFAGEATC KEHPDTVGGA ILSGLREAVR IIDLVHSGKD YVAEVEALQT
1301: YQVQSDSERN EVRDMSNRLE ARELSTALCK NSSDASYAVA SKESVLQEMF FSANTTPGRL HLAKELLKLP PDALKSFAGS KEGLTKLNSW ILDSLGKNAT
1401: QLLRHCVRLL LLVSTDLVAV RLSGIGRTVK EKVCVHTSRD IRAIARQLVS MWIEVFRKEK GSNGALKMLR RLPSVESSKT RSKDLHSGMR TSHVPNEAGA
1501: QRVRSAGSHS PHRTGKKPDK IVKLSSIMAT KSDGSSLRSQ KQHHDPEPKG DQGMVMSEEE AAVFAAAEAA RVAAIAAAQA YASAEAVISK PRELPKIPSF
1601: GDFARRDHHL DESDTRKKMT SDKHGRLECI SEIDSRNGKT KNSSAEHANC PDVDSSKMTV DNCTQRSYSN EKACLINIKD NSAESGAVDS RFTRAWVDTD
1701: AVSIDGVKHP IAIERWQAQA MEADKEFYSR IRIPMEEGSG SQKQTCKSSA SQVAESKPAS EGQSRGVEHI KQGLIAFIST LLMPLYKSKK IDREAYKTMM
1801: RKAVTKIIDA CTEGEKLMTA NEFLDFRRKT KIQTFVDKLV ERHWHVAPAP KS
0001: MDGKEKKSGS KRGSKVFQFD DDADDDEPIG SLLEIMKHKS SKKDKVETES TGKQRQKQVV EKKLSALGKD SEDMDDTLAS FRKRLKGNKK GVESGTSRVR
0101: NHEGVDTVTN SNLKPIEEAN KNEVQSVLLR ENGASNSIQK CASETGTLLH KFSGKDKAAS PSHEKVETVS SEKEADVFHQ ITKEESEIPM SEKAVELSRV
0201: SVPMPDVHGE VNCTIAPDKH IHLGEPTSES GYYREKNLVM CDCGTQFNFE DRSFESNTQV TLCQKCKYSS HHNASNGGGI QVNTLEDGTA QASPVSIIPC
0301: EDENFRGDAI SLPNSGKPST LQRPERIAKK RKLGNMVYEG DVKWENEQGF LDCQSDKSFK GSDKCGFVPS ISKEIEIGRA AAVTAGLKAQ SVSPIEKIIL
0401: KEVLKRKGSN QEYLVCRNSI LGLWSKNVSR ILPVTECGVT GGPSESELPS ASLIREVYKF LDQRGYINAG ISSVNGKAAS STNQDYDLLQ GRQLEESSMA
0501: SVADSEEGVA FILGQVKAVE STSEGKKCAL QNDERDLVGC ATSEMLESIS KKCEASIIDD NKRSVSMNAL QDSTASNVEK HPETFSVAKP ALSSTLSSAH
0601: SNQMRGRDCV PCEVIDEKKV IVIGAGPAGL TAARHLQRQG FSVTVLEARS RVGGRVFTDR SSLSVPVDLG ASIITGIEAD VPSERMPDPS VLVCNQLGLE
0701: LSVLHGFCPL YDTVTGKKVP AELDDALQAE FNSLIDDVDL LVEEIGKERA NKMSLEDGLE YGLQRLRMPH DKVNIDKFGL LNSSSKTGIR GPFMQDESWK
0801: DDFLNPLERR VMNWHFAHTE YGCAAVLKEV SLPHWNQDEF YGGFGGPHAM IKGGYSRVVE SLAEGLDIHL NKIVSDVSYV SDVSAMDNSK HKVRVSTSNG
0901: CEYLGDAVLV TVPLGCLKAE TIKFSPPLPD WKYASIKQLG FGVLNKVVLE FPTVFWDDSV DYFGATAEET DLRGECFMFW NVKKTVGAPV LIALVVGKAA
1001: FEYTNKSKSE HVNHAMMVLR KLFGGDLVPD PVASVVTDWG TDPYSYGAYS YVAIGASGED YDVLGRPVQN CLFFAGEATC KEHPDTVGGA MMTGVREAVR
1101: IIDILRSGND YTAEIETLEK AQRKSVPVRD EVRDLIKRLE VVELSNVLAR QSLLRNMFFS AKTTVGRLHL AKELLNLPGE TLKSFAGTKE GLAVLNSWIL
1201: DSMGKNGTQL LRHCVHILVR VTSDLFALRL SGIGKTVKEK VCAHTSRDIR AIASQLVNVW LDLYRKEKAN SGKKSLRQAN TTNTSRIRRK LNSPDTDSKG
1301: KLSNGNDVKT DEEFEDNQLP MSEEEKAVFA EAEAARAAAE AAAKAFSEAY HNTSLQLPKI PSFHKFARRE QYAKMDESDF RKKFPGNVLG RQDCMSEIDS
1401: RNCKVRDWYD FPASCLDLDS ARIPVDNYSQ PSHSNELVSH SKFRECSGES VAADTSFLTG AWVDTGGSSD GFKDSQAIDR WQSQAAAADP EFFNRTLHIK
1501: DEEDSIACST GPPSWKHDQR ANECSVSQVT VNKEPHKNHI RSADRLKQGV VDFVASLLMA PYRAKKIDRD VYKSIMKKTA TKVMQHTTDV EKAMAVTQFL
1601: DSKRKNKIRD FVDKQVDKYM VIPQVPKP
0101: NHEGVDTVTN SNLKPIEEAN KNEVQSVLLR ENGASNSIQK CASETGTLLH KFSGKDKAAS PSHEKVETVS SEKEADVFHQ ITKEESEIPM SEKAVELSRV
0201: SVPMPDVHGE VNCTIAPDKH IHLGEPTSES GYYREKNLVM CDCGTQFNFE DRSFESNTQV TLCQKCKYSS HHNASNGGGI QVNTLEDGTA QASPVSIIPC
0301: EDENFRGDAI SLPNSGKPST LQRPERIAKK RKLGNMVYEG DVKWENEQGF LDCQSDKSFK GSDKCGFVPS ISKEIEIGRA AAVTAGLKAQ SVSPIEKIIL
0401: KEVLKRKGSN QEYLVCRNSI LGLWSKNVSR ILPVTECGVT GGPSESELPS ASLIREVYKF LDQRGYINAG ISSVNGKAAS STNQDYDLLQ GRQLEESSMA
0501: SVADSEEGVA FILGQVKAVE STSEGKKCAL QNDERDLVGC ATSEMLESIS KKCEASIIDD NKRSVSMNAL QDSTASNVEK HPETFSVAKP ALSSTLSSAH
0601: SNQMRGRDCV PCEVIDEKKV IVIGAGPAGL TAARHLQRQG FSVTVLEARS RVGGRVFTDR SSLSVPVDLG ASIITGIEAD VPSERMPDPS VLVCNQLGLE
0701: LSVLHGFCPL YDTVTGKKVP AELDDALQAE FNSLIDDVDL LVEEIGKERA NKMSLEDGLE YGLQRLRMPH DKVNIDKFGL LNSSSKTGIR GPFMQDESWK
0801: DDFLNPLERR VMNWHFAHTE YGCAAVLKEV SLPHWNQDEF YGGFGGPHAM IKGGYSRVVE SLAEGLDIHL NKIVSDVSYV SDVSAMDNSK HKVRVSTSNG
0901: CEYLGDAVLV TVPLGCLKAE TIKFSPPLPD WKYASIKQLG FGVLNKVVLE FPTVFWDDSV DYFGATAEET DLRGECFMFW NVKKTVGAPV LIALVVGKAA
1001: FEYTNKSKSE HVNHAMMVLR KLFGGDLVPD PVASVVTDWG TDPYSYGAYS YVAIGASGED YDVLGRPVQN CLFFAGEATC KEHPDTVGGA MMTGVREAVR
1101: IIDILRSGND YTAEIETLEK AQRKSVPVRD EVRDLIKRLE VVELSNVLAR QSLLRNMFFS AKTTVGRLHL AKELLNLPGE TLKSFAGTKE GLAVLNSWIL
1201: DSMGKNGTQL LRHCVHILVR VTSDLFALRL SGIGKTVKEK VCAHTSRDIR AIASQLVNVW LDLYRKEKAN SGKKSLRQAN TTNTSRIRRK LNSPDTDSKG
1301: KLSNGNDVKT DEEFEDNQLP MSEEEKAVFA EAEAARAAAE AAAKAFSEAY HNTSLQLPKI PSFHKFARRE QYAKMDESDF RKKFPGNVLG RQDCMSEIDS
1401: RNCKVRDWYD FPASCLDLDS ARIPVDNYSQ PSHSNELVSH SKFRECSGES VAADTSFLTG AWVDTGGSSD GFKDSQAIDR WQSQAAAADP EFFNRTLHIK
1501: DEEDSIACST GPPSWKHDQR ANECSVSQVT VNKEPHKNHI RSADRLKQGV VDFVASLLMA PYRAKKIDRD VYKSIMKKTA TKVMQHTTDV EKAMAVTQFL
1601: DSKRKNKIRD FVDKQVDKYM VIPQVPKP
Arabidopsis Description
LDL3Lysine-specific histone demethylase 1 homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:F4JLS1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.