Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
25464976
nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400009649 | Potato | cytosol | 59.72 | 95.76 |
| GSMUA_Achr2P09900_001 | Banana | cytosol | 38.11 | 55.97 |
| KRH17390 | Soybean | nucleus | 48.12 | 52.8 |
| KRH05909 | Soybean | nucleus | 48.08 | 52.39 |
| AT4G16310.4 | Thale cress | nucleus | 40.42 | 51.6 |
| CDY22771 | Canola | nucleus | 38.74 | 51.05 |
| CDY42542 | Canola | nucleus | 39.03 | 50.91 |
| Bra040571.1-P | Field mustard | nucleus | 38.59 | 50.79 |
| Os10t0532150-00 | Rice | cytosol, nucleus, plastid | 5.73 | 47.98 |
| Zm00001d029714_P001 | Maize | extracellular | 37.82 | 43.33 |
| Os10t0532100-01 | Rice | nucleus | 25.12 | 43.21 |
| EER94594 | Sorghum | nucleus | 37.39 | 43.19 |
| TraesCS6B01G449900.1 | Wheat | nucleus | 37.68 | 42.42 |
| TraesCS6D01G389200.1 | Wheat | nucleus | 37.73 | 42.33 |
| TraesCS6A01G405500.2 | Wheat | nucleus | 37.63 | 42.22 |
| HORVU6Hr1G092910.1 | Barley | nucleus | 36.57 | 41.8 |
| Solyc05g055590.1.1 | Tomato | cytosol | 10.64 | 34.8 |
| Solyc02g033080.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 5.77 | 34.58 |
| Solyc07g043590.2.1 | Tomato | cytosol, mitochondrion, peroxisome, plastid | 8.08 | 34.29 |
| Solyc12g006370.1.1 | Tomato | plastid | 8.04 | 34.22 |
| Solyc03g031880.2.1 | Tomato | cytosol | 7.41 | 32.22 |
| Solyc02g081390.2.1 | Tomato | cytosol | 7.65 | 32.12 |
| Solyc07g063500.2.1 | Tomato | cytosol, mitochondrion, nucleus | 11.6 | 31.92 |
| Solyc03g007160.1.1 | Tomato | plasma membrane, vacuole | 2.55 | 28.65 |
| Solyc05g018880.1.1 | Tomato | endoplasmic reticulum | 6.74 | 27.34 |
| Solyc07g063450.1.1 | Tomato | cytosol | 11.69 | 26.56 |
| Solyc07g039310.1.1 | Tomato | golgi | 6.5 | 26.32 |
| Solyc05g055580.1.1 | Tomato | cytosol, peroxisome, plastid | 7.31 | 26.21 |
| Solyc11g008320.1.1 | Tomato | nucleus | 12.18 | 25.2 |
| Solyc01g087590.2.1 | Tomato | vacuole | 5.34 | 22.33 |
| Solyc12g008850.1.1 | Tomato | cytosol | 6.5 | 20.09 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:12.3.3.8.2 | Gene3D:3.50.50.60 | Gene3D:3.90.660.10 | InterPro:Amino_oxidase | InterPro:FAD/NAD-bd_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:Homeobox-like_sf | InterPro:IPR007526 |
| InterPro:IPR036188 | InterPro:IPR036388 | UniProt:K4BVI9 | PFAM:PF01593 | PFAM:PF04433 | PRINTS:PR00419 |
| PFscan:PS50934 | PANTHER:PTHR10742 | PANTHER:PTHR10742:SF354 | SUPFAM:SSF46689 | SUPFAM:SSF51905 | SUPFAM:SSF54373 |
| InterPro:SWIRM | EnsemblPlantsGene:Solyc04g081100.2 | EnsemblPlants:Solyc04g081100.2.1 | UniParc:UPI0002765E8D | InterPro:WH-like_DNA-bd_sf | SEG:seg |
Description
Lysine-specific histone demethylase 1 homolog 3 [Source:Projected from Arabidopsis thaliana (AT4G16310) UniProtKB/Swiss-Prot;Acc:F4JLS1]
Coordinates
chr4:-:65140188..65149884
Molecular Weight (calculated)
227881.0 Da
IEP (calculated)
5.325
GRAVY (calculated)
-0.415
Length
2078 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGEEENVELR LERGTKKRIE MKFDSGDDEP IGSLLKLKSK KQSKKAKVDL GGSKDVVQKT AVKDEHLVGM DDTLASFRKK LRGPKKDSGS VSTIGKSSSS
0101: NASKLTVESP DGSVKAVAKI VENGLSDVEC LSEGIIDKGF EKGNKRKGKR PKVSSELKKV EISEDMSLQN DKESGKSPPN CMDGILEDSL SAFLKKAQSG
0201: MFKKSHSSLQ LKRGKESEVL CDVLNSCPTA TEIFPSISKN MCQKLVEGMP ESNENVHVAL DRGSVDMHLS ENKEFVQLIQ LQSDSRPELL SSALNNVELL
0301: KSSIAIDDTS SIEGSQLDLP ACFNKIAGVV DGEVKCHSKL SEEETATTYN IVRGNCKDLH DEDVLKNCSI YYEQSASKDG FSDRPMATGR DVLSAGIITP
0401: ENVEMLEHPV IETKFNADMD VNAILSSRET HVDDQMCSSN RVDDSGSCRS VQLLNKLDHT SEGSTCNVFS RTLISSTFRL EGLTAAKEKT DMEGSGYAQV
0501: RLAPDFIAVE KCSSDFDDQQ RISGDSVNEQ ACSPVSLPKE DGQVFAGGLS LVSIGRSQQV NASQMKQEDQ IMENDDDLYD SSKQLTIDNA ATSLRKCSLV
0601: FHQSELADEN CEGAHHQSRV FVSGDDEADD TSSPSITPEC DESVAEETEA KLAAEEKEQR IFSGQRASRK TKKRRHGDMA YEGDVDWDVL VHGQDLFSSH
0701: QDGEGRHAFK TREKLESSLT VMDTENGGIA AVSVGLKARE VGPVERIKFK ELLKRRVGLL EFLECRNQIL SLWNKDISRV LPLSECGVSE TPLADESPRA
0801: SLIRQIYSFL DQCGYINFGI ASEKDKAENG AEHSLKILKE EKTIEKSGAS VADRDDGVSF ILGRSKSSEI IMPEKNDVLS DEGKKTEKCG ADCQLIDRRA
0901: IELSTLAEPR ECPIDDCRVN GYLDIQSPRQ PFDLGLVAQV PSSEVKDSEL QNIVDPGLLP PNNTEIDGRA ADKHIVISED SCGFTSDSLG CQSLNTCCDA
1001: KGKKEIIVVG AGPAGLTAAR HLKRQGFHVT VLEARSRIGG RVFTDRSSLS VPVDLGASII TGIEADVATE RRPDPSSLIC AQLGLELTVL NSDCPLYDVA
1101: TGQKVPVDLD EALEAEFNSL LDDMVLLVAQ KGEHAMRMSL EDGLEYALKK RQKARFARNH MGNESQKLSV TAVESMALSD VGVPQNNNSK VEILSPPERR
1201: VMDWHFANLE YGCAALLKEV SLPYWNQDDT YGGFGGAHCM IKGGYSSVVE ALGEELCVHL NHIVTDISYC KKDVLSNNDL FNKVKVSTTN GREFSGDAVL
1301: ITVPLGCLKA ETIKFSPPLP QWKDLSIQRL GFGVLNKVVL EFPEVFWDDS IDYFGATAED TDERGRCFMF WNVKKTVGAP VLIALVVGKA AIDGQEMSSD
1401: DHVKHSLLVL RKLYGEKMVP DPVASVVTNW GKDPYSYGAY SYVAVGSSGE DYDILGRPVE NCLFFAGEAT CKEHPDTVGG AMMSGLREAV RIIDILTTGT
1501: DYTAEVEAME DAMRHSDVER SEIRDIIKRL EAVELSSVLC KESLDGVKIV TRENLLRDMF CKANTTAGRL HLAKELLKLP VEVLRSFAGT KEGLSTLNLW
1601: MLDSMGKDGT QLLRHCVRLL VLVSTDLLAV RLSGIGKTVK EKVCVHTSRD IRAVASQLVN VWIELFRKEK AANGGLKLLR QSTATDTSKS KHIAAPGKPP
1701: IRSHPSAVDS KRSSKVSSSA GNHLAVSVNN KKLNVRPATI GAIPVVEPST SQASVGRQND TSEETQNFPM SEEEKAAFAA AEAARLAALA AAEAYASSGA
1801: KCNMPLQLPK IPSFHKFARR EQYANMDESD IRKNWPGGVV GRQDCLSEID SRNCRVRDWS VDFSAAGVNL DSSKMSVDNR SQRSLSNDNA SQLNYKEHSA
1901: ECAPVDSSIF TKAWVDSSNS VGIKDYNAIE MWQCQAAAAN SDFYDPVMHV TDEEDSNVSS KMDMRKHDVL VCESSASQIT VNKEALDNQP RGAKRIKQAV
2001: VDYVASLLMP LYKARKLDRD GYKSIMKKTA TKVMEHATDA KKAMHVYEFL DFKRKNKIRD FVDKLVERHI QMNPGAKS
0101: NASKLTVESP DGSVKAVAKI VENGLSDVEC LSEGIIDKGF EKGNKRKGKR PKVSSELKKV EISEDMSLQN DKESGKSPPN CMDGILEDSL SAFLKKAQSG
0201: MFKKSHSSLQ LKRGKESEVL CDVLNSCPTA TEIFPSISKN MCQKLVEGMP ESNENVHVAL DRGSVDMHLS ENKEFVQLIQ LQSDSRPELL SSALNNVELL
0301: KSSIAIDDTS SIEGSQLDLP ACFNKIAGVV DGEVKCHSKL SEEETATTYN IVRGNCKDLH DEDVLKNCSI YYEQSASKDG FSDRPMATGR DVLSAGIITP
0401: ENVEMLEHPV IETKFNADMD VNAILSSRET HVDDQMCSSN RVDDSGSCRS VQLLNKLDHT SEGSTCNVFS RTLISSTFRL EGLTAAKEKT DMEGSGYAQV
0501: RLAPDFIAVE KCSSDFDDQQ RISGDSVNEQ ACSPVSLPKE DGQVFAGGLS LVSIGRSQQV NASQMKQEDQ IMENDDDLYD SSKQLTIDNA ATSLRKCSLV
0601: FHQSELADEN CEGAHHQSRV FVSGDDEADD TSSPSITPEC DESVAEETEA KLAAEEKEQR IFSGQRASRK TKKRRHGDMA YEGDVDWDVL VHGQDLFSSH
0701: QDGEGRHAFK TREKLESSLT VMDTENGGIA AVSVGLKARE VGPVERIKFK ELLKRRVGLL EFLECRNQIL SLWNKDISRV LPLSECGVSE TPLADESPRA
0801: SLIRQIYSFL DQCGYINFGI ASEKDKAENG AEHSLKILKE EKTIEKSGAS VADRDDGVSF ILGRSKSSEI IMPEKNDVLS DEGKKTEKCG ADCQLIDRRA
0901: IELSTLAEPR ECPIDDCRVN GYLDIQSPRQ PFDLGLVAQV PSSEVKDSEL QNIVDPGLLP PNNTEIDGRA ADKHIVISED SCGFTSDSLG CQSLNTCCDA
1001: KGKKEIIVVG AGPAGLTAAR HLKRQGFHVT VLEARSRIGG RVFTDRSSLS VPVDLGASII TGIEADVATE RRPDPSSLIC AQLGLELTVL NSDCPLYDVA
1101: TGQKVPVDLD EALEAEFNSL LDDMVLLVAQ KGEHAMRMSL EDGLEYALKK RQKARFARNH MGNESQKLSV TAVESMALSD VGVPQNNNSK VEILSPPERR
1201: VMDWHFANLE YGCAALLKEV SLPYWNQDDT YGGFGGAHCM IKGGYSSVVE ALGEELCVHL NHIVTDISYC KKDVLSNNDL FNKVKVSTTN GREFSGDAVL
1301: ITVPLGCLKA ETIKFSPPLP QWKDLSIQRL GFGVLNKVVL EFPEVFWDDS IDYFGATAED TDERGRCFMF WNVKKTVGAP VLIALVVGKA AIDGQEMSSD
1401: DHVKHSLLVL RKLYGEKMVP DPVASVVTNW GKDPYSYGAY SYVAVGSSGE DYDILGRPVE NCLFFAGEAT CKEHPDTVGG AMMSGLREAV RIIDILTTGT
1501: DYTAEVEAME DAMRHSDVER SEIRDIIKRL EAVELSSVLC KESLDGVKIV TRENLLRDMF CKANTTAGRL HLAKELLKLP VEVLRSFAGT KEGLSTLNLW
1601: MLDSMGKDGT QLLRHCVRLL VLVSTDLLAV RLSGIGKTVK EKVCVHTSRD IRAVASQLVN VWIELFRKEK AANGGLKLLR QSTATDTSKS KHIAAPGKPP
1701: IRSHPSAVDS KRSSKVSSSA GNHLAVSVNN KKLNVRPATI GAIPVVEPST SQASVGRQND TSEETQNFPM SEEEKAAFAA AEAARLAALA AAEAYASSGA
1801: KCNMPLQLPK IPSFHKFARR EQYANMDESD IRKNWPGGVV GRQDCLSEID SRNCRVRDWS VDFSAAGVNL DSSKMSVDNR SQRSLSNDNA SQLNYKEHSA
1901: ECAPVDSSIF TKAWVDSSNS VGIKDYNAIE MWQCQAAAAN SDFYDPVMHV TDEEDSNVSS KMDMRKHDVL VCESSASQIT VNKEALDNQP RGAKRIKQAV
2001: VDYVASLLMP LYKARKLDRD GYKSIMKKTA TKVMEHATDA KKAMHVYEFL DFKRKNKIRD FVDKLVERHI QMNPGAKS
0001: MDGKEKKSGS KRGSKVFQFD DDADDDEPIG SLLEIMKHKS SKKDKVETES TGKQRQKQVV EKKLSALGKD SEDMDDTLAS FRKRLKGNKK GVESGTSRVR
0101: NHEGVDTVTN SNLKPIEEAN KNEVQSVLLR ENGASNSIQK CASETGTLLH KFSGKDKAAS PSHEKVETVS SEKEADVFHQ ITKEESEIPM SEKAVELSRV
0201: SVPMPDVHGE VNCTIAPDKH IHLGEPTSES GYYREKNLVM CDCGTQFNFE DRSFESNTQV TLCQKCKYSS HHNASNGGGI QVNTLEDGTA QASPVSIIPC
0301: EDENFRGDAI SLPNSGKPST LQRPERIAKK RKLGNMVYEG DVKWENEQGF LDCQSDKSFK GSDKCGFVPS ISKEIEIGRA AAVTAGLKAQ SVSPIEKIIL
0401: KEVLKRKGSN QEYLVCRNSI LGLWSKNVSR ILPVTECGVT GGPSESELPS ASLIREVYKF LDQRGYINAG ISSVNGKAAS STNQDYDLLQ GRQLEESSMA
0501: SVADSEEGVA FILGQVKAVE STSEGKKCAL QNDERDLVGC ATSEMLESIS KKCEASIIDD NKRSVSMNAL QDSTASNVEK HPETFSVAKP ALSSTLSSAH
0601: SNQMRGRDCV PCEVIDEKKV IVIGAGPAGL TAARHLQRQG FSVTVLEARS RVGGRVFTDR SSLSVPVDLG ASIITGIEAD VPSERMPDPS VLVCNQLGLE
0701: LSVLHGFCPL YDTVTGKKVP AELDDALQAE FNSLIDDVDL LVEEIGKERA NKMSLEDGLE YGLQRLRMPH DKVNIDKFGL LNSSSKTGIR GPFMQDESWK
0801: DDFLNPLERR VMNWHFAHTE YGCAAVLKEV SLPHWNQDEF YGGFGGPHAM IKGGYSRVVE SLAEGLDIHL NKIVSDVSYV SDVSAMDNSK HKVRVSTSNG
0901: CEYLGDAVLV TVPLGCLKAE TIKFSPPLPD WKYASIKQLG FGVLNKVVLE FPTVFWDDSV DYFGATAEET DLRGECFMFW NVKKTVGAPV LIALVVGKAA
1001: FEYTNKSKSE HVNHAMMVLR KLFGGDLVPD PVASVVTDWG TDPYSYGAYS YVAIGASGED YDVLGRPVQN CLFFAGEATC KEHPDTVGGA MMTGVREAVR
1101: IIDILRSGND YTAEIETLEK AQRKSVPVRD EVRDLIKRLE VVELSNVLAR QSLLRNMFFS AKTTVGRLHL AKELLNLPGE TLKSFAGTKE GLAVLNSWIL
1201: DSMGKNGTQL LRHCVHILVR VTSDLFALRL SGIGKTVKEK VCAHTSRDIR AIASQLVNVW LDLYRKEKAN SGKKSLRQAN TTNTSRIRRK LNSPDTDSKG
1301: KLSNGNDVKT DEEFEDNQLP MSEEEKAVFA EAEAARAAAE AAAKAFSEAY HNTSLQLPKI PSFHKFARRE QYAKMDESDF RKKFPGNVLG RQDCMSEIDS
1401: RNCKVRDWYD FPASCLDLDS ARIPVDNYSQ PSHSNELVSH SKFRECSGES VAADTSFLTG AWVDTGGSSD GFKDSQAIDR WQSQAAAADP EFFNRTLHIK
1501: DEEDSIACST GPPSWKHDQR ANECSVSQVT VNKEPHKNHI RSADRLKQGV VDFVASLLMA PYRAKKIDRD VYKSIMKKTA TKVMQHTTDV EKAMAVTQFL
1601: DSKRKNKIRD FVDKQVDKYM VIPQVPKP
0101: NHEGVDTVTN SNLKPIEEAN KNEVQSVLLR ENGASNSIQK CASETGTLLH KFSGKDKAAS PSHEKVETVS SEKEADVFHQ ITKEESEIPM SEKAVELSRV
0201: SVPMPDVHGE VNCTIAPDKH IHLGEPTSES GYYREKNLVM CDCGTQFNFE DRSFESNTQV TLCQKCKYSS HHNASNGGGI QVNTLEDGTA QASPVSIIPC
0301: EDENFRGDAI SLPNSGKPST LQRPERIAKK RKLGNMVYEG DVKWENEQGF LDCQSDKSFK GSDKCGFVPS ISKEIEIGRA AAVTAGLKAQ SVSPIEKIIL
0401: KEVLKRKGSN QEYLVCRNSI LGLWSKNVSR ILPVTECGVT GGPSESELPS ASLIREVYKF LDQRGYINAG ISSVNGKAAS STNQDYDLLQ GRQLEESSMA
0501: SVADSEEGVA FILGQVKAVE STSEGKKCAL QNDERDLVGC ATSEMLESIS KKCEASIIDD NKRSVSMNAL QDSTASNVEK HPETFSVAKP ALSSTLSSAH
0601: SNQMRGRDCV PCEVIDEKKV IVIGAGPAGL TAARHLQRQG FSVTVLEARS RVGGRVFTDR SSLSVPVDLG ASIITGIEAD VPSERMPDPS VLVCNQLGLE
0701: LSVLHGFCPL YDTVTGKKVP AELDDALQAE FNSLIDDVDL LVEEIGKERA NKMSLEDGLE YGLQRLRMPH DKVNIDKFGL LNSSSKTGIR GPFMQDESWK
0801: DDFLNPLERR VMNWHFAHTE YGCAAVLKEV SLPHWNQDEF YGGFGGPHAM IKGGYSRVVE SLAEGLDIHL NKIVSDVSYV SDVSAMDNSK HKVRVSTSNG
0901: CEYLGDAVLV TVPLGCLKAE TIKFSPPLPD WKYASIKQLG FGVLNKVVLE FPTVFWDDSV DYFGATAEET DLRGECFMFW NVKKTVGAPV LIALVVGKAA
1001: FEYTNKSKSE HVNHAMMVLR KLFGGDLVPD PVASVVTDWG TDPYSYGAYS YVAIGASGED YDVLGRPVQN CLFFAGEATC KEHPDTVGGA MMTGVREAVR
1101: IIDILRSGND YTAEIETLEK AQRKSVPVRD EVRDLIKRLE VVELSNVLAR QSLLRNMFFS AKTTVGRLHL AKELLNLPGE TLKSFAGTKE GLAVLNSWIL
1201: DSMGKNGTQL LRHCVHILVR VTSDLFALRL SGIGKTVKEK VCAHTSRDIR AIASQLVNVW LDLYRKEKAN SGKKSLRQAN TTNTSRIRRK LNSPDTDSKG
1301: KLSNGNDVKT DEEFEDNQLP MSEEEKAVFA EAEAARAAAE AAAKAFSEAY HNTSLQLPKI PSFHKFARRE QYAKMDESDF RKKFPGNVLG RQDCMSEIDS
1401: RNCKVRDWYD FPASCLDLDS ARIPVDNYSQ PSHSNELVSH SKFRECSGES VAADTSFLTG AWVDTGGSSD GFKDSQAIDR WQSQAAAADP EFFNRTLHIK
1501: DEEDSIACST GPPSWKHDQR ANECSVSQVT VNKEPHKNHI RSADRLKQGV VDFVASLLMA PYRAKKIDRD VYKSIMKKTA TKVMQHTTDV EKAMAVTQFL
1601: DSKRKNKIRD FVDKQVDKYM VIPQVPKP
Arabidopsis Description
LDL3Lysine-specific histone demethylase 1 homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:F4JLS1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.