Factsheet for Solyc05g055590.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g033080.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	50.08	91.64
PGSC0003DMT400060071	Potato	peroxisome	70.55	91.06
Solyc05g055580.1.1	Tomato	cytosol, peroxisome, plastid	65.67	71.9
HORVU1Hr1G057320.1	Barley	extracellular, peroxisome	12.28	70.91
HORVU2Hr1G096300.1	Barley	plastid	38.27	53.41
GSMUA_Achr4P25280_001	Banana	plastid	62.05	51.37
Os04t0560300-01	Rice	cytosol	61.1	47.84
TraesCS2B01G425100.1	Wheat	plastid	60.79	47.83
EES12649	Sorghum	plastid	60.63	47.65
Zm00001d002684_P001	Maize	extracellular	60.31	47.4
KRH71619	Soybean	cytosol	64.25	46.58
TraesCS2D01G404400.1	Wheat	plastid	60.79	46.12
TraesCS2A01G407400.1	Wheat	cytosol	60.63	45.94
Solyc11g008320.1.1	Tomato	nucleus	70.08	44.32
CDY00667	Canola	cytosol, plastid	63.62	44.2
AT3G10390.3	Thale cress	plastid	64.88	44.02
CDX73929	Canola	nucleus, plastid	63.62	43.82
Bra001357.1-P	Field mustard	nucleus, plastid	63.31	43.7
Solyc07g063500.2.1	Tomato	cytosol, mitochondrion, nucleus	50.87	42.78
VIT_13s0019g04820.t01	Wine grape	nucleus	66.61	41.23
Solyc07g063450.1.1	Tomato	cytosol	50.87	35.3
Solyc07g043590.2.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	24.25	31.43
Solyc12g006370.1.1	Tomato	plastid	23.94	31.15
Solyc03g031880.2.1	Tomato	cytosol	22.68	30.13
Solyc02g081390.2.1	Tomato	cytosol	23.31	29.9
Solyc03g007160.1.1	Tomato	plasma membrane, vacuole	8.19	28.11
Solyc05g018880.1.1	Tomato	endoplasmic reticulum	19.53	24.22
Solyc07g039310.1.1	Tomato	golgi	18.9	23.39
Solyc01g087590.2.1	Tomato	vacuole	16.54	21.13
Solyc12g008850.1.1	Tomato	cytosol	19.84	18.75
Solyc04g081100.2.1	Tomato	nucleus	34.8	10.64

Protein Annotations

Gene3D:1.10.10.10	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10	InterPro:Amino_oxidase	InterPro:FAD/NAD-bd_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0055114	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR036188	InterPro:IPR036388	UniProt:K4C2N5
PFAM:PF01593	PFAM:PF04433	PFscan:PS50934	PANTHER:PTHR10742	PANTHER:PTHR10742:SF260	SUPFAM:SSF46689
SUPFAM:SSF51905	SUPFAM:SSF54373	InterPro:SWIRM	EnsemblPlantsGene:Solyc05g055590.1	EnsemblPlants:Solyc05g055590.1.1	TMHMM:TMhelix
UniParc:UPI0002767247	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:-:65158750..65161048

Molecular Weight (calculated)

69971.8 Da

IEP (calculated)

8.277

GRAVY (calculated)

-0.149

Length

635 amino acids

Sequence
(BLAST)

001: MNRRGGRSES KQCLNHVSSD FVGNTNEERS ALVATSLSGK ISKTRGNSLN FAHRNVHSRM VKSRISKKKL VADEIIFINN ESYSEALVAI TAGFPSDSLK
101: DEEIEAGVVS EDGGTEVYNY ILLRNHIITK WRGNVSIWLT KDMFVDVIPE QYSGLLDSAY NYLLSYGYVN FGVTLAIKDK IPTRPSKGRV IVIGAGLAGL
201: AAARQLMLFG FEVIVLEGRK RAGGRVYTKK MEGGNKIAAA DLGGSVLTST LGNPLGVLAR QLSYTLHTVR DRCPLYHADG TPVDEYLDKK VEVAYNELLE
301: KASKVRQDLS PIISLGEALE TLRKDSSVAM NDEEMNLFNW HLANLEYANA SLLSKLSLRF WDQDDPYDMG GDHCFLPGGN GRLIDALAEN VPISFEKTVH
401: TIRYGRDRVK VITAGQVFEG DMVLCTVPLG VLKRGSISFF PELPQRKLDT IRRLGFGLLN KVALLFPYVF WDSNVDTFGH VADDSKHRGE FFLFYNYATV
501: SGGPLLLALV AGKAAHRFER MTPTDAVTKV LQILKGIYEP QGINVPKPIQ IVFTSWGSDP FSYGSYSSVA VGASGDDYDI LAETVGDGRL FFAGEATTRH
601: YPATMHGAFL TGLREAAKMA HHASVRTSHL QAEKK

Best Arabidopsis Sequence Match ( AT3G10390.3 )
(BLAST)

001: MNPPDNYVPS VSHSQFSTPP PPQSSSNTNT ETSLNPFPNS ISTSISNPSF EQMVSFSAPK KRRRGRSQRS MSSLNSLPVP NVGLLPGNSN FVSSSASSSG
101: RFNVEVVNGS NQTVKSYPGI GDEIITINKE ATTEALLALT AGFPADSLTE EEIEFGVVPI VGGIEQVNYI LIRNHIISKW RENISSWVTK EMFLNSIPKH
201: CSSLLDSAYN YLVTHGYINF GIAQAIKDKF PAQSSKSSVI IVGAGLSGLA AARQLMRFGF KVTVLEGRKR PGGRVYTKKM EANRVGAAAD LGGSVLTGTL
301: GNPLGIIARQ LGSSLYKVRD KCPLYRVDGK PVDPDVDIKV EVAFNQLLDK ASKLRQLMGD VSMDVSLGAA LETFRQVSGN DVATEEMGLF NWHLANLEYA
401: NAGLVSKLSL AFWDQDDPYD MGGDHCFLPG GNGRLVQALA ENVPILYEKT VQTIRYGSNG VKVTAGNQVY EGDMVLCTVP LGVLKNGSIK FVPELPQRKL
501: DCIKRLGFGL LNKVAMLFPY VFWSTDLDTF GHLTEDPNYR GEFFLFYSYA PVAGGALLIA LVAGEAAHKF ETMPPTDAVT RVLHILRGIY EPQGINVPDP
601: LQTVCTRWGG DPFSLGSYSN VAVGASGDDY DILAESVGDG RLFFAGEATT RRYPATMHGA FVTGLREAAN MAQSAKARGI RKRIDRNPSR NAHSCAILLA
701: DLFRDPDLEF GSFCIIFSRR NPDPKSPAIL RVTLSEPRKR NEDPKADQHS NKILFQQLQS HFNQQQQIQV YTLLTRQQAL DLREVRGGDE KRLYYLCETL
801: GVKLVGRKGL GVGADSVIAS IKAERTGRKL PSSSTSGTKS GILKAKSGAL KRKMIRRIKG PLPLKQSNNN GVSESIKSES LGNGKSLEQQ QQPRIVESIG
901: GGSSMQGESK SLSTGVASSS GGSLHVGGET MKKIEQ

Arabidopsis Description

FLDProtein FLOWERING locus D-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.