Factsheet for Solyc11g008320.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 5
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019222	Potato	cytosol, plastid	96.22	96.99
HORVU1Hr1G057320.1	Barley	extracellular, peroxisome	9.06	82.73
Solyc02g033080.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	24.8	71.76
GSMUA_Achr4P25280_001	Banana	plastid	54.58	71.45
Solyc05g055590.1.1	Tomato	cytosol	44.32	70.08
KRH71619	Soybean	cytosol	60.16	68.95
EES12649	Sorghum	plastid	53.88	66.96
Os04t0560300-01	Rice	cytosol	53.98	66.83
Zm00001d002684_P001	Maize	extracellular	53.69	66.71
TraesCS2B01G425100.1	Wheat	plastid	53.39	66.42
CDY00667	Canola	cytosol, plastid	59.46	65.32
CDX73929	Canola	nucleus, plastid	59.46	64.75
Bra001357.1-P	Field mustard	nucleus, plastid	59.16	64.57
TraesCS2D01G404400.1	Wheat	plastid	53.09	63.68
TraesCS2A01G407400.1	Wheat	cytosol	52.99	63.48
AT3G10390.3	Thale cress	plastid	58.67	62.93
VIT_13s0019g04820.t01	Wine grape	nucleus	64.14	62.77
HORVU2Hr1G096300.1	Barley	plastid	28.29	62.42
Solyc05g055580.1.1	Tomato	cytosol, peroxisome, plastid	29.68	51.38
Solyc07g063500.2.1	Tomato	cytosol, mitochondrion, nucleus	38.25	50.86
Solyc07g063450.1.1	Tomato	cytosol	39.04	42.84
Solyc07g043590.2.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	15.94	32.65
Solyc12g006370.1.1	Tomato	plastid	15.44	31.76
Solyc03g031880.2.1	Tomato	cytosol	14.34	30.13
Solyc02g081390.2.1	Tomato	cytosol	14.44	29.29
Solyc03g007160.1.1	Tomato	plasma membrane, vacuole	5.08	27.57
Solyc05g018880.1.1	Tomato	endoplasmic reticulum	12.75	25.0
Solyc07g039310.1.1	Tomato	golgi	11.95	23.39
Solyc01g087590.2.1	Tomato	vacuole	10.86	21.93
Solyc12g008850.1.1	Tomato	cytosol	13.05	19.49
Solyc04g081100.2.1	Tomato	nucleus	25.2	12.18

Protein Annotations

Gene3D:1.10.10.10	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10	InterPro:Amino_oxidase	InterPro:FAD/NAD-bd_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:Homeobox-like_sf	InterPro:IPR007526
InterPro:IPR036188	InterPro:IPR036388	UniProt:K4D592	PFAM:PF01593	PFAM:PF04433	PFscan:PS50934
PANTHER:PTHR10742	PANTHER:PTHR10742:SF260	SUPFAM:SSF46689	SUPFAM:SSF51905	SUPFAM:SSF54373	InterPro:SWIRM
EnsemblPlantsGene:Solyc11g008320.1	EnsemblPlants:Solyc11g008320.1.1	UniParc:UPI000276A8CB	InterPro:WH-like_DNA-bd_sf	SEG:seg	:

Description

No Description!

Coordinates

chr11:-:2523911..2528684

Molecular Weight (calculated)

109280.0 Da

IEP (calculated)

7.672

GRAVY (calculated)

-0.259

Length

1004 amino acids

Sequence
(BLAST)

0001: MDPSDNNPSS QQSLPYITSN NPLQFTIHLP NSTPNFTSIP NSNPSRDPNP NPNPNLNPNP HSDSISDQLL SLSIPTKRRR GRPRSTATSS LDQFSKTLVE
0101: NSNLVRNLSA RKNTASFDAS DEIIVINKEA TTEALIALTA GFPADSLTDE EIEAGVVSVV GGIEQVNYIL IRNHILMKWR VNVWTWITKE MFYDVIPKHC
0201: YALLDSAHNY LVSRGYINFG VVPAIKDRIP AEPSKPSVII IGAGLAGLAA ARQLMLFGFK VTVLEGRKRA GGRVYSKKME GGNKVAAADL GGSVLTGTLG
0301: NPLGILARQL SCTLHKVRDK CPLYRVDGKP VDQDLDHKVE TAYNLLLEKA SKLRQLMGEV SQDVSLGAAL ETFRQDYEDA VNEEEMSLFN WHLANLEYAN
0401: AGLISKLSLA FWDQDDPFDM GGDHCFLPGG NGKLVHALSE NVPILYEKIV HTIRYGTDGV QVGAGAQVFE GDMVLCTVPL GVLKGGSIKF MPELPQRKLD
0501: GIKRLGFGLL NKVAMLFPYV FWGTDLDTFG HLTDNSSSRG EFFLFYSYAT VAGGPLLLAL VAGEAAHKFE TMPPTDAVTK VLQILKGIYE PQGIEVPEPI
0601: QTVCTRWGSD PFSLGSYSNV AVGSSGDDYD ILAESVGDGR LFFAGEATNR RYPATMHGAF LSGLREAANI VHHAKARTMS LKIEKKPSKS THYYASVLDD
0701: LFREPDLEFG SFSIIFARKS SDLESPAILR VTFCGPQTRN HDGIRPGRHL SNKLLFQQLQ SQFNNQHELH VYTLLSKQQA LDLREVRGGN EMRLNFLSEK
0801: LGVKLVGRKG LGPSVDSIIA SVKAERGRRK PGTLKTGVMK SKDTTLRRKI VRKAKVVSGG NRTTSFPASS SRIKAVGSST TTIPLTNLDL EPKPVCAIGS
0901: AASPSLNVRV NDDMESKSVG SSVHLLHNAS IGDKFEGNFG SSTAPLLNVG GNTGSNSDGP MYPRNTYDDS TDTCVPPITG NLASQHTSGD GDMESMMLDG
1001: ECRM

Best Arabidopsis Sequence Match ( AT3G10390.3 )
(BLAST)

001: MNPPDNYVPS VSHSQFSTPP PPQSSSNTNT ETSLNPFPNS ISTSISNPSF EQMVSFSAPK KRRRGRSQRS MSSLNSLPVP NVGLLPGNSN FVSSSASSSG
101: RFNVEVVNGS NQTVKSYPGI GDEIITINKE ATTEALLALT AGFPADSLTE EEIEFGVVPI VGGIEQVNYI LIRNHIISKW RENISSWVTK EMFLNSIPKH
201: CSSLLDSAYN YLVTHGYINF GIAQAIKDKF PAQSSKSSVI IVGAGLSGLA AARQLMRFGF KVTVLEGRKR PGGRVYTKKM EANRVGAAAD LGGSVLTGTL
301: GNPLGIIARQ LGSSLYKVRD KCPLYRVDGK PVDPDVDIKV EVAFNQLLDK ASKLRQLMGD VSMDVSLGAA LETFRQVSGN DVATEEMGLF NWHLANLEYA
401: NAGLVSKLSL AFWDQDDPYD MGGDHCFLPG GNGRLVQALA ENVPILYEKT VQTIRYGSNG VKVTAGNQVY EGDMVLCTVP LGVLKNGSIK FVPELPQRKL
501: DCIKRLGFGL LNKVAMLFPY VFWSTDLDTF GHLTEDPNYR GEFFLFYSYA PVAGGALLIA LVAGEAAHKF ETMPPTDAVT RVLHILRGIY EPQGINVPDP
601: LQTVCTRWGG DPFSLGSYSN VAVGASGDDY DILAESVGDG RLFFAGEATT RRYPATMHGA FVTGLREAAN MAQSAKARGI RKRIDRNPSR NAHSCAILLA
701: DLFRDPDLEF GSFCIIFSRR NPDPKSPAIL RVTLSEPRKR NEDPKADQHS NKILFQQLQS HFNQQQQIQV YTLLTRQQAL DLREVRGGDE KRLYYLCETL
801: GVKLVGRKGL GVGADSVIAS IKAERTGRKL PSSSTSGTKS GILKAKSGAL KRKMIRRIKG PLPLKQSNNN GVSESIKSES LGNGKSLEQQ QQPRIVESIG
901: GGSSMQGESK SLSTGVASSS GGSLHVGGET MKKIEQ

Arabidopsis Description

FLDProtein FLOWERING locus D-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.