Factsheet for Solyc07g063450.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g063500.2.1	Tomato	cytosol, mitochondrion, nucleus	74.97	90.86
VIT_19s0014g03430.t01	Wine grape	cytosol	58.25	70.6
KRH55370	Soybean	nucleus	56.17	69.18
CDY55139	Canola	endoplasmic reticulum, extracellular	43.5	68.38
CDY51731	Canola	cytosol	53.66	67.08
Bra021500.1-P	Field mustard	cytosol	53.55	67.03
CDY55136	Canola	cytosol	53.55	67.03
AT3G13682.1	Thale cress	cytosol	54.1	66.35
GSMUA_Achr5P26260_001	Banana	plastid	43.5	57.51
HORVU7Hr1G073020.3	Barley	cytosol, mitochondrion, peroxisome	43.39	54.83
EES14528	Sorghum	mitochondrion, nucleus, plasma membrane, plastid	45.14	54.27
Zm00001d024647_P001	Maize	mitochondrion	45.25	54.26
TraesCS7D01G303200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	44.7	53.89
TraesCS7B01G206700.1	Wheat	cytosol, nucleus, plasma membrane, plastid	44.48	53.55
TraesCS7A01G306400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	44.37	53.49
Solyc02g033080.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	20.22	53.31
Os08t0143400-01	Rice	nucleus	44.26	53.08
Solyc05g055590.1.1	Tomato	cytosol	35.3	50.87
Solyc11g008320.1.1	Tomato	nucleus	42.84	39.04
Solyc05g055580.1.1	Tomato	cytosol, peroxisome, plastid	23.83	37.59
Solyc12g006370.1.1	Tomato	plastid	17.05	31.97
Solyc07g043590.2.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	17.05	31.84
Solyc03g031880.2.1	Tomato	cytosol	16.5	31.59
Solyc02g081390.2.1	Tomato	cytosol	16.28	30.1
Solyc05g018880.1.1	Tomato	endoplasmic reticulum	14.86	26.56
Solyc03g007160.1.1	Tomato	plasma membrane, vacuole	5.25	25.95
Solyc07g039310.1.1	Tomato	golgi	14.54	25.93
Solyc01g087590.2.1	Tomato	vacuole	12.13	22.33
Solyc12g008850.1.1	Tomato	cytosol	14.43	19.64
Solyc04g081100.2.1	Tomato	nucleus	26.56	11.69

Protein Annotations

Gene3D:1.10.10.10	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10	InterPro:Amino_oxidase	InterPro:FAD/NAD-bd_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:Homeobox-like_sf	InterPro:IPR007526
InterPro:IPR036188	InterPro:IPR036388	UniProt:K4CH28	PFAM:PF01593	PFAM:PF04433	PFscan:PS50934
PANTHER:PTHR10742	PANTHER:PTHR10742:SF347	SUPFAM:SSF46689	SUPFAM:SSF51905	SUPFAM:SSF54373	InterPro:SWIRM
EnsemblPlantsGene:Solyc07g063450.1	EnsemblPlants:Solyc07g063450.1.1	UniParc:UPI000276BE43	InterPro:WH-like_DNA-bd_sf	SEG:seg	:

Description

No Description!

Coordinates

chr7:+:65930592..65934875

Molecular Weight (calculated)

101619.0 Da

IEP (calculated)

7.756

GRAVY (calculated)

-0.190

Length

915 amino acids

Sequence
(BLAST)

001: MENQNSGGLI SERPVRKRIA SRNYDENLMD NFIDEQLGGP VGKKIRTKKD LEKETEKEAL IALSLGFPID DLLEEEKKAG VVSELDGKEQ NDYIVVRNHI
101: LVKWRENVHI WLNKGRIRET VSVEYEHLVA IAYDFLLSNG YINFGVSPSF VSNLPEEPRE GSVIIVGAGL AGLAAARQLM SFGFKVSILE GRNRPGGRVY
201: TEKMGWKGKF AAVDLGGSVI TGIHANPLGV LARQLSIPLH KVRDKCPLYK PDGAPVDAVV DSRVELIFNK LLDKVTELRK IVSGLANDVS LGSVLEKLRR
301: IYTVAKTKEE KQLLHWHFAN LEYANAGCLS ELSAAYWDQD DPYEMDGDHC FLAGGNWGMI RALCKGVPIF YGKTVETIKY GNEGVEVIAG DQLFQADMVL
401: CTVPLGVLKR RLIRFEPELP EKKLEAIDRL GFGLLNKVAM VFPHVFWGED LDTFGCLNNY SHRRGEYFLF YSYHTVSGGP VLIALVAGDA AQLFESTEPS
501: TLVNRVMNIL KGIYEPKGIS VPDPIQSICT KWGSDPFSFG SYSHVRVQSS GSDYDILAEN LGGRLFFAGE ATIRQHPATM HGAYLSGLRE ASHIYRSMKA
601: RLNNPRKTVS KNVRPSNDVL EELFKNPDLA FGKFLFVFDP LTCDSKSLGL MRVTFGKSNN EFNTEEADNM PQHLLNPSLQ LYTVVSREQA RELQLVKEGN
701: HCKLSDLLKG LGLKLVGANG LGVQGHSLSA KIVNARKGRK RSRSCTAKHK AGNTTPEVKQ MSFHGNIELP DWASNITSVL WIPVRATCDE LLKGAPNLVE
801: GLRTIALKLE FGVSQNQIFE RTIAVHFTDP FSVSIRVTDK STDKKLLLQV ILQSQVQATL TIYDSWLDLQ DDFAPTRNGD KKPISGFFPL VISPKSRAGI
901: LFSVCLASAP IEEET

Best Arabidopsis Sequence Match ( AT3G13682.1 )
(BLAST)

001: MNSPASDETA PRRNRRKVSR KNYDENAMDE LIEKQLGGKA KKKYRTKQDL EKETETEALI ALSVGFPIDE LLEEEIRAGV VRELGGKEQN DYIVVRNHIV
101: ARWRGNVGIW LLKDQIRETV SSDFEHLISA AYDFLLFNGY INFGVSPLFA PYIPEEGTEG SVIVVGAGLA GLAAARQLLS FGFKVLVLEG RSRPGGRVYT
201: QKMGGKDRFA AVELGGSVIT GLHANPLGVL ARQLSIPLHK VRDNCPLYNS EGVLVDKVAD SNVEFGFNKL LDKVTEVREM MEGAAKKISL GEVLETLRVL
301: YGVAKDSEER KLFDWHLANL EYANAGCLSN LSAAYWDQDD PYEMGGDHCF LAGGNWRLIN ALAEGLPIIY GKSVDTIKYG DGGVEVISGS QIFQADMILC
401: TVPLGVLKKR SIKFEPELPR RKQAAIDRLG FGLLNKVAML FPSVFWGDEL DTFGCLNESS INRGEFFLFY AYHTVSGGPA LVALVAGEAA QRFECTEPSV
501: LLHRVLKKLR GIYGPKGVVV PDPIQTVCTR WGSDPLSYGS YSHVRVGSSG VDYDILAESV SNRLFFAGEA TTRQHPATMH GAYLSGLREA SKILHVANYL
601: RSNLKKPVQR YSGVNINVLE DMFKRPDIAI GKLSFVFNPL TDDPKSFGLV RVCFDNFEED PTNRLQLYTI LSREQANKIK ELDENSNESK LSCLMNTLGL
701: KLMGANSVLD TGGALISVIA NARRGRSRSH VVAGQCNLPL NPLHFN

Arabidopsis Description

LDL2Lysine-specific histone demethylase 1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.