Factsheet for Os08t0143400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 23303719

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G073020.3	Barley	cytosol, mitochondrion, peroxisome	76.93	81.08
TraesCS7A01G306400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	80.6	81.03
TraesCS7B01G206700.1	Wheat	cytosol, nucleus, plasma membrane, plastid	80.6	80.92
TraesCS7D01G303200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	80.47	80.9
Zm00001d024647_P001	Maize	mitochondrion	77.06	77.06
EES14528	Sorghum	mitochondrion, nucleus, plasma membrane, plastid	76.02	76.22
GSMUA_Achr5P26260_001	Banana	plastid	55.44	61.13
CDY55139	Canola	endoplasmic reticulum, extracellular	44.69	58.59
AT3G13682.1	Thale cress	cytosol	54.0	55.23
Bra021500.1-P	Field mustard	cytosol	52.82	55.13
CDY55136	Canola	cytosol	52.82	55.13
CDY51731	Canola	cytosol	52.82	55.05
VIT_19s0014g03430.t01	Wine grape	cytosol	54.26	54.83
KRH55370	Soybean	nucleus	52.69	54.1
PGSC0003DMT400049658	Potato	cytosol	53.08	53.36
Solyc07g063500.2.1	Tomato	cytosol, mitochondrion, nucleus	51.9	52.45
Solyc07g063450.1.1	Tomato	cytosol	53.08	44.26
Os04t0560300-01	Rice	cytosol	45.48	42.79
Os02t0755200-01	Rice	nucleus	45.22	40.64
Os04t0623300-01	Rice	peroxisome	20.05	31.61
Os04t0671200-01	Rice	cytosol, peroxisome, plastid	19.66	30.8
Os04t0671300-01	Rice	peroxisome	19.27	29.88
Os01t0710200-01	Rice	mitochondrion	17.69	26.37
Os09t0368500-01	Rice	golgi	14.68	23.63
Os09t0368200-00	Rice	golgi, vacuole	15.07	23.19
Os03t0193400-00	Rice	nucleus, peroxisome	5.24	19.8
Os10t0532100-01	Rice	nucleus	27.92	17.63
Os04t0671100-01	Rice	cytosol, mitochondrion, plastid	1.05	5.84
Os10t0532150-00	Rice	cytosol, nucleus, plastid	1.31	4.03

Protein Annotations

Gene3D:1.10.10.10	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10	EntrezGene:4344644	UniProt:A0A146F8E4
EMBL:AK120532	InterPro:Amino_oxidase	ProteinID:BAD13197.1	ProteinID:BAD13198.1	ProteinID:BAD17023.1	ProteinID:BAD17024.1
ProteinID:BAF22890.1	ProteinID:BAT03801.1	ProteinID:BAU68442.1	ProteinID:BAU68443.1	InterPro:FAD/NAD-bd_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006325
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016491
GO:GO:0019538	GO:GO:0051568	GO:GO:0055114	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR036188
InterPro:IPR036388	EnsemblPlantsGene:Os08g0143400	EnsemblPlants:Os08t0143400-01	PFAM:PF01593	PFAM:PF04433	PFscan:PS50934
PANTHER:PTHR10742	PANTHER:PTHR10742:SF347	UniProt:Q6YYZ1	SUPFAM:SSF46689	SUPFAM:SSF51905	SUPFAM:SSF54373
InterPro:SWIRM	UniParc:UPI0000350446	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_015650197.1	SEG:seg	:

Description

Heading date 18, SWIRM domain-containing protein HDMA703SWIRM and amine oxidase domain-containing protein, Homolog of Arabidopsis FLOWERING LOCUS D (FLD), Control of flowering time (Os08t0143400-01);Similar to cDNA clone:J013128B21, full insert sequence. (Os08t0143400-02)

Coordinates

chr8:-:2385537..2389276

Molecular Weight (calculated)

83979.8 Da

IEP (calculated)

7.307

GRAVY (calculated)

-0.170

Length

763 amino acids

Sequence
(BLAST)

001: MSSSSRRPAR RAALTARSSY DESLVDAELE SYLGNARSRR ISRLRRLSAD ERQRETETEA LIALSLGFPI DELLPAERPL LPAPVAAAPN DYIVVRNHIL
101: ASWRADPRVP LPRSRVQETV AASYDNLVAV AHGFLAREGH INFGVSAAFP ASPPPDAPQR LAASVLVVGA GLAGLAAARQ LLRFGLRVLV LEGRARPGGR
201: VYTTHLGGDQ AAVELGGSVI TGIHTNPLGV LARQLGIPLH KVRDSCPLYH HDGRTVDMKL DRSMDLVFNT LLEHATRLRE YLKKAAEGIS LGEGIERLRR
301: FYKVAKSVEE REVLDWHLAN LEFSNAGCLS ELSLAHWDQD DQYEMGGDHC FLAGGNARLV HALCDGVPVL YEKTVKRIEH GEDGVSITVE GGQVFKADMA
401: LCTAPLGVLK SRSIIFEPEL PERKLEAIQR LGFGLLNKVA MVFPHVFWDE EIDTFGCLNK ERSKRGEFFL FYSYHTVSGG AVLIALVAGE AALEFEKVDP
501: AVALHRVLGI LKGIYGPKGV TVPDPIQSCC TRWGSDPLCS GSYSHIRVGS SGTDYDILAE SVNDRLFFAG EATNRAYPAT MHGALLSGLR EASKILHASE
601: SRLNSDYKKY ALQKSIRLIN NVLDDLFMEP DLECGRFSFV FSYITPEEEQ APGLARITLE KPLLLPSKKR KVKGNQKDQD PVAEKIDQEV FYLYATVSQE
701: QATELLECDN DKSRIAVLCK DLGVKLMGYD STYDVCSHLI SSISRAQKAR KRLQGPKSLK TGL

Best Arabidopsis Sequence Match ( AT3G13682.1 )
(BLAST)

001: MNSPASDETA PRRNRRKVSR KNYDENAMDE LIEKQLGGKA KKKYRTKQDL EKETETEALI ALSVGFPIDE LLEEEIRAGV VRELGGKEQN DYIVVRNHIV
101: ARWRGNVGIW LLKDQIRETV SSDFEHLISA AYDFLLFNGY INFGVSPLFA PYIPEEGTEG SVIVVGAGLA GLAAARQLLS FGFKVLVLEG RSRPGGRVYT
201: QKMGGKDRFA AVELGGSVIT GLHANPLGVL ARQLSIPLHK VRDNCPLYNS EGVLVDKVAD SNVEFGFNKL LDKVTEVREM MEGAAKKISL GEVLETLRVL
301: YGVAKDSEER KLFDWHLANL EYANAGCLSN LSAAYWDQDD PYEMGGDHCF LAGGNWRLIN ALAEGLPIIY GKSVDTIKYG DGGVEVISGS QIFQADMILC
401: TVPLGVLKKR SIKFEPELPR RKQAAIDRLG FGLLNKVAML FPSVFWGDEL DTFGCLNESS INRGEFFLFY AYHTVSGGPA LVALVAGEAA QRFECTEPSV
501: LLHRVLKKLR GIYGPKGVVV PDPIQTVCTR WGSDPLSYGS YSHVRVGSSG VDYDILAESV SNRLFFAGEA TTRQHPATMH GAYLSGLREA SKILHVANYL
601: RSNLKKPVQR YSGVNINVLE DMFKRPDIAI GKLSFVFNPL TDDPKSFGLV RVCFDNFEED PTNRLQLYTI LSREQANKIK ELDENSNESK LSCLMNTLGL
701: KLMGANSVLD TGGALISVIA NARRGRSRSH VVAGQCNLPL NPLHFN

Arabidopsis Description

LDL2Lysine-specific histone demethylase 1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.