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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:
  • plastid 2
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 4
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular
Any Predictor:plastid, secretory
BaCelLo:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY51731 Canola cytosol 98.63 78.42
CDY55136 Canola cytosol 97.25 77.43
AT3G13682.1 Thale cress cytosol 87.29 68.1
VIT_19s0014g03430.t01 Wine grape cytosol 69.93 53.91
KRH55370 Soybean nucleus 67.18 52.62
PGSC0003DMT400049658 Potato cytosol 67.53 51.78
Solyc07g063500.2.1 Tomato cytosol, mitochondrion, nucleus 65.81 50.73
GSMUA_Achr5P26260_001 Banana plastid 56.53 47.54
HORVU7Hr1G073020.3 Barley cytosol, mitochondrion, peroxisome 59.11 47.51
TraesCS7A01G306400.1 Wheat cytosol, nucleus, plasma membrane, plastid 59.79 45.85
TraesCS7B01G206700.1 Wheat cytosol, nucleus, plasma membrane, plastid 59.79 45.79
TraesCS7D01G303200.1 Wheat cytosol, nucleus, plasma membrane, plastid 59.45 45.59
EES14528 Sorghum mitochondrion, nucleus, plasma membrane, plastid 59.11 45.2
Zm00001d024647_P001 Maize mitochondrion 58.76 44.82
Os08t0143400-01 Rice nucleus 58.59 44.69
Solyc07g063450.1.1 Tomato cytosol 68.38 43.5
CDY46926 Canola cytosol 50.34 41.98
CDY31848 Canola nucleus 50.17 41.65
CDX73929 Canola nucleus, plastid 55.33 34.92
CDY00667 Canola cytosol, plastid 54.81 34.9
CDY42808 Canola peroxisome 26.8 32.5
CDX83508 Canola peroxisome 26.46 32.08
CDY55500 Canola peroxisome 26.63 31.63
CDY53655 Canola peroxisome 26.29 31.22
CDY14867 Canola peroxisome 26.29 31.22
CDY30376 Canola peroxisome 26.12 31.02
CDX67773 Canola peroxisome 25.09 29.86
CDY16424 Canola cytosol, peroxisome, plastid 23.71 27.44
CDY54438 Canola cytosol, peroxisome, plastid 23.88 27.25
CDX98346 Canola cytosol 25.6 27.14
CDY54281 Canola endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole 22.34 26.53
CDY30206 Canola mitochondrion 22.34 25.84
CDY43522 Canola endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole 20.96 24.6
CDY06780 Canola endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole 21.82 23.52
CDX70516 Canola extracellular 17.87 22.08
CDX78534 Canola extracellular 18.04 21.88
CDY22771 Canola nucleus 35.05 12.94
CDY42542 Canola nucleus 35.22 12.87
Protein Annotations
MapMan:12.3.3.8.1Gene3D:3.50.50.60Gene3D:3.90.660.10GO:A0A078J0D7UniProt:A0A078J0D7InterPro:Amino_oxidase
EnsemblPlants:CDY55139ProteinID:CDY55139ProteinID:CDY55139.1InterPro:FAD/NAD-bd_sfGO:GO:0003674GO:GO:0003824
GO:GO:0008150GO:GO:0008152GO:GO:0016491GO:GO:0055114EnsemblPlantsGene:GSBRNA2T00016435001InterPro:IPR036188
PFAM:PF01593PANTHER:PTHR10742PANTHER:PTHR10742:SF347SUPFAM:SSF51905SUPFAM:SSF54373TMHMM:TMhelix
UniParc:UPI0004EE13E3SEG:seg::::
Description
BnaC01g44800DBnaC01g44800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0D7]
Coordinates
chrLK033377:+:44173..46003
Molecular Weight (calculated)
63699.4 Da
IEP (calculated)
7.966
GRAVY (calculated)
-0.120
Length
582 amino acids
Sequence
(BLAST)
001: MEHASTLLIV VGAGLAGLAA ARQLLSFGFK VVVLEGRSRP GGRVYTQKMG GKDRFAAVEL GGSVITGLHA NPLGVLARQL SIPLHKVRDH CPLYNSEGEV
101: VDKAVDSNVE FGFNKLLDKV AEVREMMGGA ANKVSLGEVL ETLRVLYGVA KDSEERKLFD WHLANLEYAN AGCLSNLSAA YWDQDDPYEM GGDHCFLAGG
201: NWRLINALAE GLPILYGKKV DAIRYGDRGV EVVSGSQRFQ GDMILCTVPL GVLKKRCIKF EPELPRRKQA AIDRLGFGLL NKVAMLFPSV FWGDDLDTFG
301: CLNDSSIDRG EFFLFYAYHT VSGGPALVAL VAGEAAQRFE STEPSTLLHR VMKKLRGIYG PKGVVVPDPI QTICTKWGSD PFSYGSYSHV RVGSSGVDYD
401: ILAESVNNRL FFAGEATTRQ HPATMHGAYL SGLREASRIQ RVVNVSRGYP RKPVQRYSGV SNDVLEDLFK RPDIASGQLS FVFNPSTDDP KSLGLVRVCF
501: DSFEDDPTNN HLQLYSILSW EQAQKLQELG ESSNESKLTY MVNTLGLKLM GGNAVLDTCG ALISVIANAR KGRSRTRVVA RQ
Best Arabidopsis Sequence Match ( AT3G13682.1 )
(BLAST)
001: MNSPASDETA PRRNRRKVSR KNYDENAMDE LIEKQLGGKA KKKYRTKQDL EKETETEALI ALSVGFPIDE LLEEEIRAGV VRELGGKEQN DYIVVRNHIV
101: ARWRGNVGIW LLKDQIRETV SSDFEHLISA AYDFLLFNGY INFGVSPLFA PYIPEEGTEG SVIVVGAGLA GLAAARQLLS FGFKVLVLEG RSRPGGRVYT
201: QKMGGKDRFA AVELGGSVIT GLHANPLGVL ARQLSIPLHK VRDNCPLYNS EGVLVDKVAD SNVEFGFNKL LDKVTEVREM MEGAAKKISL GEVLETLRVL
301: YGVAKDSEER KLFDWHLANL EYANAGCLSN LSAAYWDQDD PYEMGGDHCF LAGGNWRLIN ALAEGLPIIY GKSVDTIKYG DGGVEVISGS QIFQADMILC
401: TVPLGVLKKR SIKFEPELPR RKQAAIDRLG FGLLNKVAML FPSVFWGDEL DTFGCLNESS INRGEFFLFY AYHTVSGGPA LVALVAGEAA QRFECTEPSV
501: LLHRVLKKLR GIYGPKGVVV PDPIQTVCTR WGSDPLSYGS YSHVRVGSSG VDYDILAESV SNRLFFAGEA TTRQHPATMH GAYLSGLREA SKILHVANYL
601: RSNLKKPVQR YSGVNINVLE DMFKRPDIAI GKLSFVFNPL TDDPKSFGLV RVCFDNFEED PTNRLQLYTI LSREQANKIK ELDENSNESK LSCLMNTLGL
701: KLMGANSVLD TGGALISVIA NARRGRSRSH VVAGQCNLPL NPLHFN
Arabidopsis Description
LDL2Lysine-specific histone demethylase 1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.