Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55139 | Canola | endoplasmic reticulum, extracellular | 68.1 | 87.29 |
| CDY55136 | Canola | cytosol | 85.12 | 86.87 |
| CDY51731 | Canola | cytosol | 84.05 | 85.66 |
| Bra021500.1-P | Field mustard | cytosol | 83.91 | 85.64 |
| VIT_19s0014g03430.t01 | Wine grape | cytosol | 70.38 | 69.54 |
| KRH55370 | Soybean | nucleus | 66.09 | 66.35 |
| PGSC0003DMT400049658 | Potato | cytosol | 66.22 | 65.09 |
| Solyc07g063500.2.1 | Tomato | cytosol, mitochondrion, nucleus | 64.21 | 63.44 |
| GSMUA_Achr5P26260_001 | Banana | plastid | 55.23 | 59.54 |
| HORVU7Hr1G073020.3 | Barley | cytosol, mitochondrion, peroxisome | 54.42 | 56.08 |
| TraesCS7B01G206700.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 56.3 | 55.26 |
| TraesCS7D01G303200.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 56.17 | 55.2 |
| TraesCS7A01G306400.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 56.17 | 55.2 |
| EES14528 | Sorghum | mitochondrion, nucleus, plasma membrane, plastid | 55.9 | 54.8 |
| Zm00001d024647_P001 | Maize | mitochondrion | 56.03 | 54.78 |
| Solyc07g063450.1.1 | Tomato | cytosol | 66.35 | 54.1 |
| Os08t0143400-01 | Rice | nucleus | 55.23 | 54.0 |
| AT1G62830.1 | Thale cress | nucleus | 51.47 | 45.5 |
| AT3G10390.3 | Thale cress | plastid | 49.33 | 39.32 |
| AT2G43020.1 | Thale cress | peroxisome | 21.58 | 32.86 |
| AT3G59050.1 | Thale cress | cytosol, nucleus, peroxisome | 20.38 | 31.15 |
| AT1G65840.1 | Thale cress | cytosol, peroxisome, plastid | 19.84 | 29.78 |
| AT4G29720.1 | Thale cress | mitochondrion | 17.56 | 24.58 |
| AT5G13700.1 | Thale cress | extracellular | 13.94 | 22.03 |
| AT4G16310.4 | Thale cress | nucleus | 33.51 | 15.36 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:12.3.3.8.1 | Gene3D:3.50.50.60 | Gene3D:3.90.660.10 | EntrezGene:820577 | ProteinID:AEE75397.1 |
| ArrayExpress:AT3G13682 | EnsemblPlantsGene:AT3G13682 | RefSeq:AT3G13682 | TAIR:AT3G13682 | RefSeq:AT3G13682-TAIR-G | EnsemblPlants:AT3G13682.1 |
| TAIR:AT3G13682.1 | InterPro:Amino_oxidase | ProteinID:BAB01917.1 | InterPro:FAD/NAD-bd_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006325 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016491 | GO:GO:0016569 | GO:GO:0019538 | GO:GO:0051568 |
| GO:GO:0055114 | InterPro:Homeobox-like_sf | InterPro:IPR007526 | InterPro:IPR036188 | InterPro:IPR036388 | Symbol:LDL2 |
| RefSeq:NP_187981.1 | PFAM:PF01593 | PFAM:PF04433 | PO:PO:0000037 | PO:PO:0000191 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0025022 | PFscan:PS50934 | PANTHER:PTHR10742 | PANTHER:PTHR10742:SF347 |
| UniProt:Q9LID0 | SUPFAM:SSF46689 | SUPFAM:SSF51905 | SUPFAM:SSF54373 | InterPro:SWIRM | UniParc:UPI00000A5764 |
| InterPro:WH-like_DNA-bd_sf | SEG:seg | : | : | : | : |
Description
LDL2Lysine-specific histone demethylase 1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID0]
Coordinates
chr3:-:4478873..4481767
Molecular Weight (calculated)
82354.9 Da
IEP (calculated)
7.172
GRAVY (calculated)
-0.163
Length
746 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSPASDETA PRRNRRKVSR KNYDENAMDE LIEKQLGGKA KKKYRTKQDL EKETETEALI ALSVGFPIDE LLEEEIRAGV VRELGGKEQN DYIVVRNHIV
101: ARWRGNVGIW LLKDQIRETV SSDFEHLISA AYDFLLFNGY INFGVSPLFA PYIPEEGTEG SVIVVGAGLA GLAAARQLLS FGFKVLVLEG RSRPGGRVYT
201: QKMGGKDRFA AVELGGSVIT GLHANPLGVL ARQLSIPLHK VRDNCPLYNS EGVLVDKVAD SNVEFGFNKL LDKVTEVREM MEGAAKKISL GEVLETLRVL
301: YGVAKDSEER KLFDWHLANL EYANAGCLSN LSAAYWDQDD PYEMGGDHCF LAGGNWRLIN ALAEGLPIIY GKSVDTIKYG DGGVEVISGS QIFQADMILC
401: TVPLGVLKKR SIKFEPELPR RKQAAIDRLG FGLLNKVAML FPSVFWGDEL DTFGCLNESS INRGEFFLFY AYHTVSGGPA LVALVAGEAA QRFECTEPSV
501: LLHRVLKKLR GIYGPKGVVV PDPIQTVCTR WGSDPLSYGS YSHVRVGSSG VDYDILAESV SNRLFFAGEA TTRQHPATMH GAYLSGLREA SKILHVANYL
601: RSNLKKPVQR YSGVNINVLE DMFKRPDIAI GKLSFVFNPL TDDPKSFGLV RVCFDNFEED PTNRLQLYTI LSREQANKIK ELDENSNESK LSCLMNTLGL
701: KLMGANSVLD TGGALISVIA NARRGRSRSH VVAGQCNLPL NPLHFN
101: ARWRGNVGIW LLKDQIRETV SSDFEHLISA AYDFLLFNGY INFGVSPLFA PYIPEEGTEG SVIVVGAGLA GLAAARQLLS FGFKVLVLEG RSRPGGRVYT
201: QKMGGKDRFA AVELGGSVIT GLHANPLGVL ARQLSIPLHK VRDNCPLYNS EGVLVDKVAD SNVEFGFNKL LDKVTEVREM MEGAAKKISL GEVLETLRVL
301: YGVAKDSEER KLFDWHLANL EYANAGCLSN LSAAYWDQDD PYEMGGDHCF LAGGNWRLIN ALAEGLPIIY GKSVDTIKYG DGGVEVISGS QIFQADMILC
401: TVPLGVLKKR SIKFEPELPR RKQAAIDRLG FGLLNKVAML FPSVFWGDEL DTFGCLNESS INRGEFFLFY AYHTVSGGPA LVALVAGEAA QRFECTEPSV
501: LLHRVLKKLR GIYGPKGVVV PDPIQTVCTR WGSDPLSYGS YSHVRVGSSG VDYDILAESV SNRLFFAGEA TTRQHPATMH GAYLSGLREA SKILHVANYL
601: RSNLKKPVQR YSGVNINVLE DMFKRPDIAI GKLSFVFNPL TDDPKSFGLV RVCFDNFEED PTNRLQLYTI LSREQANKIK ELDENSNESK LSCLMNTLGL
701: KLMGANSVLD TGGALISVIA NARRGRSRSH VVAGQCNLPL NPLHFN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.