Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027014.1-P | Field mustard | cytosol | 71.33 | 86.25 |
| CDY31848 | Canola | nucleus | 71.45 | 86.02 |
| CDY46926 | Canola | cytosol | 70.97 | 85.82 |
| VIT_03s0017g01000.t01 | Wine grape | nucleus | 52.61 | 65.58 |
| KRH48463 | Soybean | cytosol, peroxisome | 28.2 | 65.21 |
| KRH48462 | Soybean | nucleus, plastid | 28.2 | 64.67 |
| KRH39215 | Soybean | nucleus | 62.44 | 62.81 |
| GSMUA_Achr3P06520_001 | Banana | extracellular, nucleus, peroxisome | 22.75 | 62.34 |
| PGSC0003DMT400095293 | Potato | nucleus | 58.89 | 61.21 |
| GSMUA_Achr9P14930_001 | Banana | nucleus | 46.09 | 55.57 |
| TraesCS6B01G348300.1 | Wheat | nucleus | 52.96 | 54.18 |
| TraesCS6A01G318300.1 | Wheat | nucleus | 52.73 | 54.14 |
| Os02t0755200-01 | Rice | nucleus | 52.25 | 51.94 |
| OQU85392 | Sorghum | nucleus | 52.01 | 51.65 |
| AT3G13682.1 | Thale cress | cytosol | 45.5 | 51.47 |
| Zm00001d018102_P001 | Maize | nucleus | 51.78 | 51.47 |
| TraesCS6D01G297500.1 | Wheat | plastid | 52.84 | 50.86 |
| HORVU6Hr1G078160.1 | Barley | plastid | 52.37 | 50.63 |
| AT3G10390.3 | Thale cress | plastid | 48.46 | 43.7 |
| AT2G43020.1 | Thale cress | peroxisome | 18.48 | 31.84 |
| AT3G59050.1 | Thale cress | cytosol, nucleus, peroxisome | 17.3 | 29.92 |
| AT1G65840.1 | Thale cress | cytosol, peroxisome, plastid | 17.42 | 29.58 |
| AT4G29720.1 | Thale cress | mitochondrion | 15.05 | 23.83 |
| AT5G13700.1 | Thale cress | extracellular | 12.2 | 21.82 |
| AT4G16310.4 | Thale cress | nucleus | 28.55 | 14.8 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:12.3.3.8.1 | Gene3D:3.50.50.60 | Gene3D:3.90.660.10 | EntrezGene:842582 | ProteinID:AAF19542.1 |
| ProteinID:AEE34010.1 | EMBL:AK222014 | ArrayExpress:AT1G62830 | EnsemblPlantsGene:AT1G62830 | RefSeq:AT1G62830 | TAIR:AT1G62830 |
| RefSeq:AT1G62830-TAIR-G | EnsemblPlants:AT1G62830.1 | TAIR:AT1G62830.1 | EMBL:AY074561 | EMBL:AY143912 | InterPro:Amino_oxidase |
| Unigene:At.43711 | InterPro:FAD/NAD-bd_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006325 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016491 |
| GO:GO:0016569 | GO:GO:0016575 | GO:GO:0019538 | GO:GO:0048364 | GO:GO:0051568 | GO:GO:0055114 |
| InterPro:Homeobox-like_sf | InterPro:IPR007526 | InterPro:IPR036188 | InterPro:IPR036388 | Symbol:LDL1 | RefSeq:NP_176471.1 |
| PFAM:PF01593 | PFAM:PF04433 | PO:PO:0000013 | PO:PO:0000025 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001031 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025181 | PFscan:PS50934 | PANTHER:PTHR10742 |
| PANTHER:PTHR10742:SF353 | UniProt:Q8VXV7 | SUPFAM:SSF46689 | SUPFAM:SSF51905 | SUPFAM:SSF54373 | InterPro:SWIRM |
| UniParc:UPI00000AC392 | InterPro:WH-like_DNA-bd_sf | SEG:seg | : | : | : |
Description
LDL1Lysine-specific histone demethylase 1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV7]
Coordinates
chr1:-:23264486..23267221
Molecular Weight (calculated)
93317.5 Da
IEP (calculated)
4.562
GRAVY (calculated)
-0.313
Length
844 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTETKETRP ETKPEDLGTH TTVDVPGEEP LGELIADDVN EVVSDASATE TDFSLSPSQS EQNIEEDGQN SLDDQSPLTE LQPLPLPPPL PVEARISESL
101: GEEESSDLVT EQQSQNPNAA EPGPRARKRR RRKRFFTEIN ANPAFSRNRR TSVGKEVDSE ALIAMSVGFP VYSLTEEEIE ANVVSIIGGK DQANYIVVRN
201: HIIALWRSNV SNWLTRDHAL ESIRAEHKTL VDTAYNFLLE HGYINFGLAP VIKEAKLRSF DGVEPPNVVV VGAGLAGLVA ARQLLSMGFR VLVLEGRDRP
301: GGRVKTRKMK GGDGVEAMAD VGGSVLTGIN GNPLGVLARQ LGLPLHKVRD ICPLYLPNGE LADASVDSKI EASFNKLLDR VCKLRQSMIE ENKSVDVPLG
401: EALETFRLVY GVAEDQQERM LLDWHLANLE YANATLLGNL SMAYWDQDDP YEMGGDHCFI PGGNEIFVHA LAENLPIFYG STVESIRYGS NGVLVYTGNK
501: EFHCDMALCT VPLGVLKKGS IEFYPELPHK KKEAIQRLGF GLLNKVAMLF PCNFWGEEID TFGRLTEDPS TRGEFFLFYS YSSVSGGPLL VALVAGDAAE
601: RFETLSPTDS VKRVLQILRG IYHPKGIVVP DPVQALCSRW GQDKFSYGSY SYVAVGSSGD DYDILAESVG DGRVFFAGEA TNRQYPATMH GAFLSGMREA
701: ANILRVARRR ASSSALNPNQ ICIDKEEEVD EEEDRCLDQL FETPDLTFGN FSVLFTPNSD EPESMSLLRV RIQMEKPESG LWLYGLVTRK QAIELGEMDG
801: DELRNEYLRE KLGLVPVERK SLSQEGESMI SSLKAARLNR QIFD
101: GEEESSDLVT EQQSQNPNAA EPGPRARKRR RRKRFFTEIN ANPAFSRNRR TSVGKEVDSE ALIAMSVGFP VYSLTEEEIE ANVVSIIGGK DQANYIVVRN
201: HIIALWRSNV SNWLTRDHAL ESIRAEHKTL VDTAYNFLLE HGYINFGLAP VIKEAKLRSF DGVEPPNVVV VGAGLAGLVA ARQLLSMGFR VLVLEGRDRP
301: GGRVKTRKMK GGDGVEAMAD VGGSVLTGIN GNPLGVLARQ LGLPLHKVRD ICPLYLPNGE LADASVDSKI EASFNKLLDR VCKLRQSMIE ENKSVDVPLG
401: EALETFRLVY GVAEDQQERM LLDWHLANLE YANATLLGNL SMAYWDQDDP YEMGGDHCFI PGGNEIFVHA LAENLPIFYG STVESIRYGS NGVLVYTGNK
501: EFHCDMALCT VPLGVLKKGS IEFYPELPHK KKEAIQRLGF GLLNKVAMLF PCNFWGEEID TFGRLTEDPS TRGEFFLFYS YSSVSGGPLL VALVAGDAAE
601: RFETLSPTDS VKRVLQILRG IYHPKGIVVP DPVQALCSRW GQDKFSYGSY SYVAVGSSGD DYDILAESVG DGRVFFAGEA TNRQYPATMH GAFLSGMREA
701: ANILRVARRR ASSSALNPNQ ICIDKEEEVD EEEDRCLDQL FETPDLTFGN FSVLFTPNSD EPESMSLLRV RIQMEKPESG LWLYGLVTRK QAIELGEMDG
801: DELRNEYLRE KLGLVPVERK SLSQEGESMI SSLKAARLNR QIFD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.