Factsheet for Zm00001d018102_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85392	Sorghum	nucleus	96.23	96.12
TraesCS6A01G318300.1	Wheat	nucleus	82.1	84.79
Os02t0755200-01	Rice	nucleus	84.69	84.69
TraesCS6B01G348300.1	Wheat	nucleus	81.63	84.0
HORVU6Hr1G078160.1	Barley	plastid	82.1	79.84
TraesCS6D01G297500.1	Wheat	plastid	81.86	79.25
GSMUA_Achr3P06520_001	Banana	extracellular, nucleus, peroxisome	24.62	67.86
GSMUA_Achr9P14930_001	Banana	nucleus	51.24	62.14
VIT_03s0017g01000.t01	Wine grape	nucleus	49.35	61.89
KRH48463	Soybean	cytosol, peroxisome	25.68	59.73
Bra027014.1-P	Field mustard	cytosol	46.53	56.59
CDY46926	Canola	cytosol	46.53	56.59
CDY31848	Canola	nucleus	46.29	56.06
PGSC0003DMT400095293	Potato	nucleus	52.65	55.05
KRH39215	Soybean	nucleus	52.53	53.16
AT1G62830.1	Thale cress	nucleus	51.47	51.78
KRH48462	Soybean	nucleus, plastid	22.38	51.63
Zm00001d002684_P001	Maize	extracellular	44.88	47.15
Zm00001d024647_P001	Maize	mitochondrion	41.81	46.53
Zm00001d001883_P008	Maize	cytosol, peroxisome, plastid	17.2	29.8
Zm00001d002266_P003	Maize	peroxisome	16.84	29.61
Zm00001d026334_P001	Maize	peroxisome	16.49	29.05
Zm00001d036513_P001	Maize	cytosol, peroxisome, plastid	15.78	28.39
Zm00001d026586_P003	Maize	peroxisome, plastid	16.96	27.22
Zm00001d043681_P001	Maize	mitochondrion	16.02	26.98
Zm00001d028172_P001	Maize	cytosol	11.54	26.49
Zm00001d024281_P001	Maize	extracellular	14.61	24.8
Zm00001d029714_P001	Maize	extracellular	28.74	13.45

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:103627761	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10	UniProt:A0A1D6HKR7
ProteinID:AQK75020.1	InterPro:Amino_oxidase	ncoils:Coil	InterPro:FAD/NAD-bd_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016491	GO:GO:0016575	GO:GO:0019538	GO:GO:0048364
GO:GO:0051568	GO:GO:0055114	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR036188	InterPro:IPR036388
PFAM:PF01593	PFAM:PF04433	PFscan:PS50934	PANTHER:PTHR10742	PANTHER:PTHR10742:SF353	SUPFAM:SSF46689
SUPFAM:SSF51905	SUPFAM:SSF54373	InterPro:SWIRM	UniParc:UPI00022122EE	InterPro:WH-like_DNA-bd_sf	EnsemblPlantsGene:Zm00001d018102
EnsemblPlants:Zm00001d018102_P001	EnsemblPlants:Zm00001d018102_T001	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:-:214210975..214213524

Molecular Weight (calculated)

91180.7 Da

IEP (calculated)

5.639

GRAVY (calculated)

-0.120

Length

849 amino acids

Sequence
(BLAST)

001: MEEGSKAQLP PPLHTEAMDQ LPPVLMDQDE GREAAETMEE EEAAAADISD AADPMDDGEA AGDSAAAAEP MEDDAPTSSP TPSAPSATAA VDDSTIARKR
101: RRRKKQFPGM IPTAGVRVLR GSSSSSSHTA AHLSGVPRRR GRPPTSSSLR LARELDSEAL IALAAGFPAD SLSEDEIVAA VLPRIGGAEQ SNYLVVRNHI
201: VALWRSNPLS PVAANAALAS IRAEHAPLVA AAHSFLSEHA YINFGLAPAV LSLPPQPPPS SPPPSVLIVG AGLAGLAAAR HLIALGFKVA VIEGRLRPGG
301: RVFTKTMRSS AVEYPDTVAA ADLGGSVLTG INGNPLGVIA RQLGFPLHKV RDKCPLYLPD GRPVDPDMDA RVEAAFNQLL DKVCQLRQVI ADGVPHGVDL
401: SLGMALEAFR AAHGVAAEHE ERMLLDWHLA NLEYANAAPL ADLSMAFWDQ DDPYEMGGDH CFIPGGNSQF VRAFSDGIPV FYGQNVKRIR YGRDGVMVHT
501: DKQAFCGDMV LCTVPLGVLK KGDIKFVPEL PAQKKEAIQR LGFGLLNKVV MLFPYDFWDG RIDTFGHLTE DSRQRGEFFL FYSYSSVSGG PLLIALVAGE
601: SAVKFEQASP MENVEKVLET LRKIFSPKGI EVPNPLQAIC TRWGTDRFTY GSYSYVAIGA SGDDYDILAE SVHDRVFFAG EATNRRYPAT MHGALLSGYR
701: EAANILRAAR RRAKNVYSPE KMDINVDVKV GVNGELKDTV RDSCIDLDDL FRSPDAAFGG FSALHDPSTS EPDSVSLLRV GIGARKLGAG SLFLYGLIMR
801: KHVAVLAAIE GDEQRLSIMY RDFGTKLVGL DSLGDAGESL ISRIKAARK

Best Arabidopsis Sequence Match ( AT1G62830.1 )
(BLAST)

001: MSTETKETRP ETKPEDLGTH TTVDVPGEEP LGELIADDVN EVVSDASATE TDFSLSPSQS EQNIEEDGQN SLDDQSPLTE LQPLPLPPPL PVEARISESL
101: GEEESSDLVT EQQSQNPNAA EPGPRARKRR RRKRFFTEIN ANPAFSRNRR TSVGKEVDSE ALIAMSVGFP VYSLTEEEIE ANVVSIIGGK DQANYIVVRN
201: HIIALWRSNV SNWLTRDHAL ESIRAEHKTL VDTAYNFLLE HGYINFGLAP VIKEAKLRSF DGVEPPNVVV VGAGLAGLVA ARQLLSMGFR VLVLEGRDRP
301: GGRVKTRKMK GGDGVEAMAD VGGSVLTGIN GNPLGVLARQ LGLPLHKVRD ICPLYLPNGE LADASVDSKI EASFNKLLDR VCKLRQSMIE ENKSVDVPLG
401: EALETFRLVY GVAEDQQERM LLDWHLANLE YANATLLGNL SMAYWDQDDP YEMGGDHCFI PGGNEIFVHA LAENLPIFYG STVESIRYGS NGVLVYTGNK
501: EFHCDMALCT VPLGVLKKGS IEFYPELPHK KKEAIQRLGF GLLNKVAMLF PCNFWGEEID TFGRLTEDPS TRGEFFLFYS YSSVSGGPLL VALVAGDAAE
601: RFETLSPTDS VKRVLQILRG IYHPKGIVVP DPVQALCSRW GQDKFSYGSY SYVAVGSSGD DYDILAESVG DGRVFFAGEA TNRQYPATMH GAFLSGMREA
701: ANILRVARRR ASSSALNPNQ ICIDKEEEVD EEEDRCLDQL FETPDLTFGN FSVLFTPNSD EPESMSLLRV RIQMEKPESG LWLYGLVTRK QAIELGEMDG
801: DELRNEYLRE KLGLVPVERK SLSQEGESMI SSLKAARLNR QIFD

Arabidopsis Description

LDL1Lysine-specific histone demethylase 1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.