Factsheet for Bra027014.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46926	Canola	cytosol	98.85	98.85
CDY31848	Canola	nucleus	98.85	98.43
AT1G62830.1	Thale cress	nucleus	86.25	71.33
VIT_03s0017g01000.t01	Wine grape	nucleus	63.32	65.29
KRH48462	Soybean	nucleus, plastid	33.95	64.4
KRH39215	Soybean	nucleus	67.34	56.02
GSMUA_Achr9P14930_001	Banana	nucleus	54.58	54.43
PGSC0003DMT400095293	Potato	nucleus	63.18	54.31
KRH48463	Soybean	cytosol, peroxisome	27.08	51.78
TraesCS6B01G348300.1	Wheat	nucleus	56.59	47.88
TraesCS6A01G318300.1	Wheat	nucleus	56.16	47.69
Bra021500.1-P	Field mustard	cytosol	49.86	47.61
GSMUA_Achr3P06520_001	Banana	extracellular, nucleus, peroxisome	20.92	47.4
Zm00001d018102_P001	Maize	nucleus	56.59	46.53
OQU85392	Sorghum	nucleus	55.87	45.88
Os02t0755200-01	Rice	nucleus	55.73	45.82
TraesCS6D01G297500.1	Wheat	plastid	56.3	44.81
HORVU6Hr1G078160.1	Barley	plastid	55.73	44.56
Bra001357.1-P	Field mustard	nucleus, plastid	52.15	39.57
Bra000284.1-P	Field mustard	cytosol	21.2	30.83
Bra004737.1-P	Field mustard	peroxisome	21.35	30.41
Bra037741.1-P	Field mustard	peroxisome	20.92	30.1
Bra003362.1-P	Field mustard	cytosol	20.63	29.45
Bra039742.1-P	Field mustard	cytosol, peroxisome, plastid	19.77	27.77
Bra024137.1-P	Field mustard	mitochondrion	19.34	26.21
Bra011132.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	18.48	23.84
Bra006210.1-P	Field mustard	extracellular	14.76	21.87
Bra040571.1-P	Field mustard	nucleus	31.23	13.81

Protein Annotations

Gene3D:1.10.10.10	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10	InterPro:Amino_oxidase	EnsemblPlantsGene:Bra027014
EnsemblPlants:Bra027014.1	EnsemblPlants:Bra027014.1-P	InterPro:FAD/NAD-bd_sf	InterPro:Flavin_amine_oxidase	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016491	GO:GO:0016575	GO:GO:0019538	GO:GO:0048364
GO:GO:0051568	GO:GO:0055114	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR036188	InterPro:IPR036388
UniProt:M4EE04	PFAM:PF01593	PFAM:PF04433	PRINTS:PR00757	PFscan:PS50934	PANTHER:PTHR10742
SUPFAM:SSF46689	SUPFAM:SSF51905	SUPFAM:SSF54373	InterPro:SWIRM	UniParc:UPI00025424FE	InterPro:WH-like_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

AT1G62830 (E=1e-302) LDL1, SWP1, ATSWP1 | LDL1 (LSD1-LIKE1); amine oxidase/ electron carrier/ oxidoreductase

Coordinates

chrA09:+:7601076..7603172

Molecular Weight (calculated)

76432.8 Da

IEP (calculated)

4.906

GRAVY (calculated)

-0.273

Length

698 amino acids

Sequence
(BLAST)

001: MEQNQEIRPE SPENPKMATD NLTNAQASPT KEAATPSNTD GKIDKDVAAA DPNPTPAAKL QPSESDEEVD LPSISESLGE EESSDLVTEP QSQNPNPLEP
101: GPRARKRRRR KRFFTEINAN PAFPRNRRNS VGKELDSEAI TAMSVGFPVN SLTEEEIEAN VVSIIGGKEQ ANYIVVRNHI IALWRSNVSN WLTRDHALES
201: IRLEHKTLVD TAYKFLLEHG YINFGLAPVI KEAKLRSFDG LEPPNVVVVG AGLAGLVAAR QLLSMGFRVL VLEGRDRPGG RVKTRKMRGG DGVEAMADVG
301: GSVLTGINGN PLGVLARQLG LPLHKVRDIC PLYLPSGELV DVGVDSKIEA SFNKLLDRVC KLRQSMIEEI KSVDVPLGEA LETFRLVYGV AEDQEERMLF
401: DWHLANLEYA NATLLGNLSM AYWDQDDPYE MGGDHCFIPG GNETFVHALA ENLPVFYGNV VESIRYGSDG VVVYAGDKEF SCDMALCTVP LGVLKKGGIG
501: FVPELPEKKK EAIQRLGYGL LNKVAMLFPY NFWGEEIDTF GRLTEDSSTR GEFFLFYSYS SVSGGPLLVA LVAGDAAERF ETMSPTDSVK RVLQILRGIY
601: HPKGIVVPDP VQALCSRWGQ DKFSYGSYSY VAVGSSGDDY DILAESVGDG RVFFAGEATN KQYPATMHGA FLSGMREAAN ILRVARRRAS ESASNLAK

Best Arabidopsis Sequence Match ( AT1G62830.1 )
(BLAST)

001: MSTETKETRP ETKPEDLGTH TTVDVPGEEP LGELIADDVN EVVSDASATE TDFSLSPSQS EQNIEEDGQN SLDDQSPLTE LQPLPLPPPL PVEARISESL
101: GEEESSDLVT EQQSQNPNAA EPGPRARKRR RRKRFFTEIN ANPAFSRNRR TSVGKEVDSE ALIAMSVGFP VYSLTEEEIE ANVVSIIGGK DQANYIVVRN
201: HIIALWRSNV SNWLTRDHAL ESIRAEHKTL VDTAYNFLLE HGYINFGLAP VIKEAKLRSF DGVEPPNVVV VGAGLAGLVA ARQLLSMGFR VLVLEGRDRP
301: GGRVKTRKMK GGDGVEAMAD VGGSVLTGIN GNPLGVLARQ LGLPLHKVRD ICPLYLPNGE LADASVDSKI EASFNKLLDR VCKLRQSMIE ENKSVDVPLG
401: EALETFRLVY GVAEDQQERM LLDWHLANLE YANATLLGNL SMAYWDQDDP YEMGGDHCFI PGGNEIFVHA LAENLPIFYG STVESIRYGS NGVLVYTGNK
501: EFHCDMALCT VPLGVLKKGS IEFYPELPHK KKEAIQRLGF GLLNKVAMLF PCNFWGEEID TFGRLTEDPS TRGEFFLFYS YSSVSGGPLL VALVAGDAAE
601: RFETLSPTDS VKRVLQILRG IYHPKGIVVP DPVQALCSRW GQDKFSYGSY SYVAVGSSGD DYDILAESVG DGRVFFAGEA TNRQYPATMH GAFLSGMREA
701: ANILRVARRR ASSSALNPNQ ICIDKEEEVD EEEDRCLDQL FETPDLTFGN FSVLFTPNSD EPESMSLLRV RIQMEKPESG LWLYGLVTRK QAIELGEMDG
801: DELRNEYLRE KLGLVPVERK SLSQEGESMI SSLKAARLNR QIFD

Arabidopsis Description

LDL1Lysine-specific histone demethylase 1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.