Factsheet for GSMUA_Achr9P14930_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0017g01000.t01	Wine grape	nucleus	59.0	61.0
GSMUA_Achr3P06520_001	Banana	extracellular, nucleus, peroxisome	26.57	60.39
Bra027014.1-P	Field mustard	cytosol	54.43	54.58
CDY46926	Canola	cytosol	54.43	54.58
CDY31848	Canola	nucleus	54.43	54.35
TraesCS6A01G318300.1	Wheat	nucleus	62.14	52.92
TraesCS6B01G348300.1	Wheat	nucleus	62.14	52.73
KRH48462	Soybean	nucleus, plastid	27.57	52.45
Os02t0755200-01	Rice	nucleus	63.57	52.41
Zm00001d018102_P001	Maize	nucleus	62.14	51.24
OQU85392	Sorghum	nucleus	62.14	51.18
PGSC0003DMT400095293	Potato	nucleus	57.71	49.75
HORVU6Hr1G078160.1	Barley	plastid	62.0	49.71
TraesCS6D01G297500.1	Wheat	plastid	62.0	49.49
KRH39215	Soybean	nucleus	57.86	48.27
KRH48463	Soybean	cytosol, peroxisome	24.14	46.3
AT1G62830.1	Thale cress	nucleus	55.57	46.09
GSMUA_Achr5P26260_001	Banana	plastid	43.43	43.93
GSMUA_Achr4P25280_001	Banana	plastid	46.86	42.76
GSMUA_Achr9P21250_001	Banana	plastid	18.57	26.69
GSMUA_Achr5P00660_001	Banana	peroxisome	17.86	25.77
GSMUA_AchrUn_...	Banana	plastid	17.71	24.9
GSMUA_Achr11P...	Banana	mitochondrion	18.14	24.56
GSMUA_Achr3P32350_001	Banana	mitochondrion	17.14	23.72
GSMUA_Achr6P24910_001	Banana	endoplasmic reticulum	9.14	23.53
GSMUA_Achr4P15860_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	12.57	21.36
GSMUA_Achr5P08640_001	Banana	cytosol, nucleus, peroxisome	13.57	21.02
GSMUA_Achr6P24880_001	Banana	cytosol	8.43	20.92
GSMUA_Achr6P24900_001	Banana	vacuole	7.43	17.11
GSMUA_Achr6P24870_001	Banana	vacuole	6.0	16.54
GSMUA_Achr2P09900_001	Banana	cytosol	27.43	13.57

Protein Annotations

Gene3D:1.10.10.10	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	InterPro:Amino_oxidase	InterPro:FAD/NAD-bd_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0055114
EnsemblPlantsGene:GSMUA_Achr9G14930_001	EnsemblPlants:GSMUA_Achr9P14930_001	EnsemblPlants:GSMUA_Achr9T14930_001	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR036188
InterPro:IPR036388	UniProt:M0U0F1	PFAM:PF01593	PFAM:PF04433	PFscan:PS50934	PANTHER:PTHR10742
PANTHER:PTHR10742:SF353	SUPFAM:SSF46689	SUPFAM:SSF51905	SUPFAM:SSF54373	InterPro:SWIRM	TMHMM:TMhelix
UniParc:UPI000296A002	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:

Description

Lysine-specific histone demethylase 1 homolog 1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G14930_001]

Coordinates

chr9:+:9761801..9764770

Molecular Weight (calculated)

76441.0 Da

IEP (calculated)

7.871

GRAVY (calculated)

-0.044

Length

700 amino acids

Sequence
(BLAST)

001: MASSHNTPSP FPLPAEDSEI TPPVDGPRTT APLPGSGGGD TPPQGAGAAS GRKRRRRDKQ FPEMIPTACL RVLRPTTARS ASVVYSEKLI DELIQMQVND
101: AAPRRRGRGR PPSSSLRLAR ELDVEALIAM AVGFPVDSLT EEEIEANVVP VLGGVAQSNY IVVRNHILAR WRSNASVWIT EAHAMESIRS EHRALVSAAY
201: AFLLDHGFIN FGLAPAIITA PPRHPPSLPA PSVAILEGRR RPGGRVFTKT MESCASSTTP AVVATADLGG SVLTGINGNP LGVLARQLGF PLHKIRDLCP
301: LYLPDGRPVD RVIDARLEAA FNQLLDKVCK FRQAVTDELK SVDLSLGTAL EAFRKAYGFA DSSEERMLLD WHLANLEYAN AALLADLSMV YWDQDDPYEM
401: GGDHCFIPGG NARFVRALAE NIPIFYGRIV TRIQYGCDGV MVYADGQVFR GDMALCTVPL GVLKKGCIEF VPELPKEKRE AIKRLGFGLL NKDPSNRGEF
501: FLFYSYSSVS GGPLLVALVA GEAAIKFETT SPIKHVERVL EVLKGIFAPK GIEVPEPLQV ICTRWGSDRF TYGSYSYVAV GSSGDDYDIL AESVGDGRVF
601: FAGEATNRRY PATMHGALLS GFREATNMAR ATRRRSTMPV GEGRFSSHQI VIQMKEKSIS VVDHFSLIWK SLFFFIYSFH LVCAMCTNLL CLFTTSYGAS

Best Arabidopsis Sequence Match ( AT1G62830.1 )
(BLAST)

001: MSTETKETRP ETKPEDLGTH TTVDVPGEEP LGELIADDVN EVVSDASATE TDFSLSPSQS EQNIEEDGQN SLDDQSPLTE LQPLPLPPPL PVEARISESL
101: GEEESSDLVT EQQSQNPNAA EPGPRARKRR RRKRFFTEIN ANPAFSRNRR TSVGKEVDSE ALIAMSVGFP VYSLTEEEIE ANVVSIIGGK DQANYIVVRN
201: HIIALWRSNV SNWLTRDHAL ESIRAEHKTL VDTAYNFLLE HGYINFGLAP VIKEAKLRSF DGVEPPNVVV VGAGLAGLVA ARQLLSMGFR VLVLEGRDRP
301: GGRVKTRKMK GGDGVEAMAD VGGSVLTGIN GNPLGVLARQ LGLPLHKVRD ICPLYLPNGE LADASVDSKI EASFNKLLDR VCKLRQSMIE ENKSVDVPLG
401: EALETFRLVY GVAEDQQERM LLDWHLANLE YANATLLGNL SMAYWDQDDP YEMGGDHCFI PGGNEIFVHA LAENLPIFYG STVESIRYGS NGVLVYTGNK
501: EFHCDMALCT VPLGVLKKGS IEFYPELPHK KKEAIQRLGF GLLNKVAMLF PCNFWGEEID TFGRLTEDPS TRGEFFLFYS YSSVSGGPLL VALVAGDAAE
601: RFETLSPTDS VKRVLQILRG IYHPKGIVVP DPVQALCSRW GQDKFSYGSY SYVAVGSSGD DYDILAESVG DGRVFFAGEA TNRQYPATMH GAFLSGMREA
701: ANILRVARRR ASSSALNPNQ ICIDKEEEVD EEEDRCLDQL FETPDLTFGN FSVLFTPNSD EPESMSLLRV RIQMEKPESG LWLYGLVTRK QAIELGEMDG
801: DELRNEYLRE KLGLVPVERK SLSQEGESMI SSLKAARLNR QIFD

Arabidopsis Description

LDL1Lysine-specific histone demethylase 1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.