Factsheet for GSMUA_Achr5P26260_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g03430.t01	Wine grape	cytosol	62.57	57.35
CDY55139	Canola	endoplasmic reticulum, extracellular	47.54	56.53
HORVU7Hr1G073020.3	Barley	cytosol, mitochondrion, peroxisome	59.1	56.49
TraesCS7A01G306400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	61.27	55.86
TraesCS7B01G206700.1	Wheat	cytosol, nucleus, plasma membrane, plastid	61.27	55.79
TraesCS7D01G303200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	61.13	55.73
CDY55136	Canola	cytosol	58.67	55.54
EES14528	Sorghum	mitochondrion, nucleus, plasma membrane, plastid	60.98	55.45
Os08t0143400-01	Rice	nucleus	61.13	55.44
AT3G13682.1	Thale cress	cytosol	59.54	55.23
Bra021500.1-P	Field mustard	cytosol	58.09	54.99
CDY51731	Canola	cytosol	58.09	54.92
KRH55370	Soybean	nucleus	58.81	54.78
Zm00001d024647_P001	Maize	mitochondrion	59.97	54.39
PGSC0003DMT400049658	Potato	cytosol	57.66	52.57
Solyc07g063500.2.1	Tomato	cytosol, mitochondrion, nucleus	56.36	51.66
GSMUA_Achr4P25280_001	Banana	plastid	48.99	44.2
GSMUA_Achr3P06520_001	Banana	extracellular, nucleus, peroxisome	19.65	44.16
Solyc07g063450.1.1	Tomato	cytosol	57.51	43.5
GSMUA_Achr9P14930_001	Banana	nucleus	43.93	43.43
GSMUA_Achr5P00660_001	Banana	peroxisome	21.24	30.31
GSMUA_Achr9P21250_001	Banana	plastid	20.95	29.77
GSMUA_AchrUn_...	Banana	plastid	20.95	29.12
GSMUA_Achr11P...	Banana	mitochondrion	21.1	28.24
GSMUA_Achr6P24910_001	Banana	endoplasmic reticulum	9.54	24.26
GSMUA_Achr3P32350_001	Banana	mitochondrion	17.2	23.52
GSMUA_Achr5P08640_001	Banana	cytosol, nucleus, peroxisome	14.6	22.35
GSMUA_Achr4P15860_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	13.15	22.09
GSMUA_Achr6P24880_001	Banana	cytosol	8.82	21.63
GSMUA_Achr6P24870_001	Banana	vacuole	6.65	18.11
GSMUA_Achr6P24900_001	Banana	vacuole	7.66	17.43
GSMUA_Achr2P09900_001	Banana	cytosol	31.5	15.41

Protein Annotations

Gene3D:1.10.10.10	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10	InterPro:Amino_oxidase	InterPro:FAD/NAD-bd_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016491
GO:GO:0019538	GO:GO:0051568	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr5G26260_001	EnsemblPlants:GSMUA_Achr5P26260_001	EnsemblPlants:GSMUA_Achr5T26260_001
InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR036188	InterPro:IPR036388	UniProt:M0T1V1	PFAM:PF01593
PFAM:PF04433	PFscan:PS50934	PANTHER:PTHR10742	PANTHER:PTHR10742:SF347	SUPFAM:SSF46689	SUPFAM:SSF51905
SUPFAM:SSF54373	InterPro:SWIRM	UniParc:UPI000295B199	InterPro:WH-like_DNA-bd_sf	SEG:seg	:

Description

Lysine-specific histone demethylase 1 homolog 2 [Source:GMGC_GENE;Acc:GSMUA_Achr5G26260_001]

Coordinates

chr5:+:27127757..27138844

Molecular Weight (calculated)

76528.7 Da

IEP (calculated)

8.262

GRAVY (calculated)

-0.183

Length

692 amino acids

Sequence
(BLAST)

001: MLSHMSWVTA PNLTPPRSSN APLVPRRAYK ASPRSRIFRS KPSPMDHPPP PPPTDGRRPT RRAAKRTNYD ESVFDALLHD HLGGSRPPRR RNRTAEERQR
101: ETETEAMIAL SLGFPIDALL DAEAAAGVVH PPGDAAARND YIVVRNHILA RWRANVRSYL SKSEIKETVS RQYDHLISSA YDFLLEHGYI NFGVSPAVRA
201: QQLLSFGFKV LVLEGRDRPG GRVYTTKMGK QGNFASVDLG GSVITGIHAN PLGVLARQLG IPLHKIRDYC PLFRPDGGHV DRSLDVEVDL VFNKLLENAA
301: RVREVLGESA DGISLGSAIE RLQLLYGVAR KTEERELLDW HLANLEYANA GCLSDLSLAH WDQDDPYEMG GDHCFLAGGN WRLINALCED VPVLYKKMVT
401: RIAYGGGFVE VVVAGGQVFQ ADMVLCSVPL GVLKSGTIKF DPELPAQKLQ AIQRLGFGLL NKVAMIFPYV FWGEEIDTFG CLSKDRSKRG EFFLFYGYHT
501: VSGGAVLIAL VAGEAALNFE HSDPVASLHS VLGILRGIYG PKGVFVPDPI QTMCTRWGSD PLCCGSYSHV RVGSSGSDYN ILAENVGGRL FFAGEATNRE
601: HPATMHGAFL SGLREASCIL QTWRKNFMGK SDSKKLSQKN LRSYSEVLAD LFKEPDLAFG VFSFVFDPSE AEDPKALGLM RFLIISFHRN WR

Best Arabidopsis Sequence Match ( AT3G13682.1 )
(BLAST)

001: MNSPASDETA PRRNRRKVSR KNYDENAMDE LIEKQLGGKA KKKYRTKQDL EKETETEALI ALSVGFPIDE LLEEEIRAGV VRELGGKEQN DYIVVRNHIV
101: ARWRGNVGIW LLKDQIRETV SSDFEHLISA AYDFLLFNGY INFGVSPLFA PYIPEEGTEG SVIVVGAGLA GLAAARQLLS FGFKVLVLEG RSRPGGRVYT
201: QKMGGKDRFA AVELGGSVIT GLHANPLGVL ARQLSIPLHK VRDNCPLYNS EGVLVDKVAD SNVEFGFNKL LDKVTEVREM MEGAAKKISL GEVLETLRVL
301: YGVAKDSEER KLFDWHLANL EYANAGCLSN LSAAYWDQDD PYEMGGDHCF LAGGNWRLIN ALAEGLPIIY GKSVDTIKYG DGGVEVISGS QIFQADMILC
401: TVPLGVLKKR SIKFEPELPR RKQAAIDRLG FGLLNKVAML FPSVFWGDEL DTFGCLNESS INRGEFFLFY AYHTVSGGPA LVALVAGEAA QRFECTEPSV
501: LLHRVLKKLR GIYGPKGVVV PDPIQTVCTR WGSDPLSYGS YSHVRVGSSG VDYDILAESV SNRLFFAGEA TTRQHPATMH GAYLSGLREA SKILHVANYL
601: RSNLKKPVQR YSGVNINVLE DMFKRPDIAI GKLSFVFNPL TDDPKSFGLV RVCFDNFEED PTNRLQLYTI LSREQANKIK ELDENSNESK LSCLMNTLGL
701: KLMGANSVLD TGGALISVIA NARRGRSRSH VVAGQCNLPL NPLHFN

Arabidopsis Description

LDL2Lysine-specific histone demethylase 1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.