Factsheet for Bra021500.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51731	Canola	cytosol	99.45	99.32
AT3G13682.1	Thale cress	cytosol	85.64	83.91
VIT_19s0014g03430.t01	Wine grape	cytosol	69.36	67.15
KRH55370	Soybean	nucleus	66.21	65.14
PGSC0003DMT400049658	Potato	cytosol	66.89	64.43
Solyc07g063500.2.1	Tomato	cytosol, mitochondrion, nucleus	65.12	63.05
GSMUA_Achr5P26260_001	Banana	plastid	54.99	58.09
HORVU7Hr1G073020.3	Barley	cytosol, mitochondrion, peroxisome	54.72	55.25
TraesCS7B01G206700.1	Wheat	cytosol, nucleus, plasma membrane, plastid	56.36	54.21
TraesCS7A01G306400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	56.22	54.15
TraesCS7D01G303200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	56.09	54.02
EES14528	Sorghum	mitochondrion, nucleus, plasma membrane, plastid	55.81	53.61
Solyc07g063450.1.1	Tomato	cytosol	67.03	53.55
Zm00001d024647_P001	Maize	mitochondrion	55.68	53.34
Os08t0143400-01	Rice	nucleus	55.13	52.82
Bra027014.1-P	Field mustard	cytosol	47.61	49.86
Bra001357.1-P	Field mustard	nucleus, plastid	51.03	40.54
Bra000284.1-P	Field mustard	cytosol	21.61	32.92
Bra004737.1-P	Field mustard	peroxisome	22.02	32.86
Bra037741.1-P	Field mustard	peroxisome	21.48	32.37
Bra003362.1-P	Field mustard	cytosol	20.93	31.29
Bra039742.1-P	Field mustard	cytosol, peroxisome, plastid	20.25	29.78
Bra024137.1-P	Field mustard	mitochondrion	18.19	25.83
Bra011132.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	17.51	23.66
Bra006210.1-P	Field mustard	extracellular	14.5	22.51
Bra040571.1-P	Field mustard	nucleus	33.65	15.58

Protein Annotations

Gene3D:1.10.10.10	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10	InterPro:Amino_oxidase	EnsemblPlantsGene:Bra021500
EnsemblPlants:Bra021500.1	EnsemblPlants:Bra021500.1-P	InterPro:FAD/NAD-bd_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016491	GO:GO:0019538	GO:GO:0051568	GO:GO:0055114
InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR036188	InterPro:IPR036388	UniProt:M4DYA4	PFAM:PF01593
PFAM:PF04433	PFscan:PS50934	PANTHER:PTHR10742	PANTHER:PTHR10742:SF347	SUPFAM:SSF46689	SUPFAM:SSF51905
SUPFAM:SSF54373	InterPro:SWIRM	UniParc:UPI0002544731	InterPro:WH-like_DNA-bd_sf	SEG:seg	:

Description

AT3G13682 (E=0.0) LDL2 | LDL2 (LSD1-LIKE2); amine oxidase/ electron carrier/ oxidoreductase

Coordinates

chrA01:+:24930586..24932863

Molecular Weight (calculated)

80774.6 Da

IEP (calculated)

7.141

GRAVY (calculated)

-0.222

Length

731 amino acids

Sequence
(BLAST)

001: MDNPSSEGSA PRRTLRRKAV RKNYDENAMD EPIETSKKKF KTKQQLEKET ETEALIALSV GFPIDELLED EIRAGVVREL GGKEQNDYIV VRNHIVARWR
101: SNVRVWLLKD RIRESVSSEC EHLISAAYEF LLYNGFINFG VSPLFNGYVP EDGSEGSVIV VGAGLAGLAA ARQLLSFGFK VVVLEGRSRP GGRVYTQRMG
201: GKERFAAVEL GGSVITGLHA NPLGVLARQL AIPLHKVRDH CPLYNSEGEV VDKAVDSNVE FGFNKLLDKV AEVREMMGGD ANKVSLGEVL ETLRVLYGVA
301: KDSEERKLFD WHLANLEYAN AGCLSNLSAA YWDQDDPYEM GGDHCFLAGG NWRLINALAE GLPILYGKRV DAIRYGDRGV EVVSGSQRFQ GDMILCTVPL
401: GVLKKRCIKF EPELPRKKQA AIDRLGFGLL NKVAMLFPSV FWGDDLDTFG CLNDSSIDRG EFFLFYAYHT VSGGPALVAL VAGEAAQRFE STEPSTLLHR
501: VMKKLRGIYG PKGVVVPDPI QTICTKWGSD PFSYGSYSHV RVGSSGVDYD ILAESVNNRL FFAGEATTRQ HPATMHGAYL SGLREASRIQ RVVNVSRGYP
601: RKPVQRYSGV SNDVLEDLFK RPDIASGQLS FVFNPSTDDP KSLGLVRVCF DSFEDDPTNH LQLYAILSWE QAQKLQELGE SSNESKLTYM VNTLGLKLMG
701: GNAVLDTCGA LISVIANARK GRSRTRVVAR Q

Best Arabidopsis Sequence Match ( AT3G13682.1 )
(BLAST)

001: MNSPASDETA PRRNRRKVSR KNYDENAMDE LIEKQLGGKA KKKYRTKQDL EKETETEALI ALSVGFPIDE LLEEEIRAGV VRELGGKEQN DYIVVRNHIV
101: ARWRGNVGIW LLKDQIRETV SSDFEHLISA AYDFLLFNGY INFGVSPLFA PYIPEEGTEG SVIVVGAGLA GLAAARQLLS FGFKVLVLEG RSRPGGRVYT
201: QKMGGKDRFA AVELGGSVIT GLHANPLGVL ARQLSIPLHK VRDNCPLYNS EGVLVDKVAD SNVEFGFNKL LDKVTEVREM MEGAAKKISL GEVLETLRVL
301: YGVAKDSEER KLFDWHLANL EYANAGCLSN LSAAYWDQDD PYEMGGDHCF LAGGNWRLIN ALAEGLPIIY GKSVDTIKYG DGGVEVISGS QIFQADMILC
401: TVPLGVLKKR SIKFEPELPR RKQAAIDRLG FGLLNKVAML FPSVFWGDEL DTFGCLNESS INRGEFFLFY AYHTVSGGPA LVALVAGEAA QRFECTEPSV
501: LLHRVLKKLR GIYGPKGVVV PDPIQTVCTR WGSDPLSYGS YSHVRVGSSG VDYDILAESV SNRLFFAGEA TTRQHPATMH GAYLSGLREA SKILHVANYL
601: RSNLKKPVQR YSGVNINVLE DMFKRPDIAI GKLSFVFNPL TDDPKSFGLV RVCFDNFEED PTNRLQLYTI LSREQANKIK ELDENSNESK LSCLMNTLGL
701: KLMGANSVLD TGGALISVIA NARRGRSRSH VVAGQCNLPL NPLHFN

Arabidopsis Description

LDL2Lysine-specific histone demethylase 1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.