Factsheet for PGSC0003DMT400049658

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g063500.2.1	Tomato	cytosol, mitochondrion, nucleus	92.62	93.11
VIT_19s0014g03430.t01	Wine grape	cytosol	70.36	70.73
KRH55370	Soybean	nucleus	67.85	69.31
CDY55139	Canola	endoplasmic reticulum, extracellular	51.78	67.53
CDY55136	Canola	cytosol	64.56	67.03
Bra021500.1-P	Field mustard	cytosol	64.43	66.89
CDY51731	Canola	cytosol	64.43	66.8
AT3G13682.1	Thale cress	cytosol	65.09	66.22
GSMUA_Achr5P26260_001	Banana	plastid	52.57	57.66
PGSC0003DMT400060071	Potato	peroxisome	37.02	57.11
HORVU7Hr1G073020.3	Barley	cytosol, mitochondrion, peroxisome	52.57	55.11
Zm00001d024647_P001	Maize	mitochondrion	54.68	54.39
TraesCS7D01G303200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	54.28	54.28
EES14528	Sorghum	mitochondrion, nucleus, plasma membrane, plastid	54.15	54.01
TraesCS7B01G206700.1	Wheat	cytosol, nucleus, plasma membrane, plastid	54.02	53.95
TraesCS7A01G306400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	53.89	53.89
Os08t0143400-01	Rice	nucleus	53.36	53.08
PGSC0003DMT400095293	Potato	nucleus	49.8	46.55
PGSC0003DMT400060365	Potato	plastid	32.67	45.76
PGSC0003DMT400019222	Potato	cytosol, plastid	50.99	38.86
PGSC0003DMT400074125	Potato	plastid	20.55	31.97
PGSC0003DMT400041150	Potato	cytosol, mitochondrion, peroxisome, plastid	20.29	31.43
PGSC0003DMT400061872	Potato	cytosol	19.24	30.54
PGSC0003DMT400050770	Potato	cytosol	19.24	29.49
PGSC0003DMT400055123	Potato	cytosol	17.79	25.96
PGSC0003DMT400045965	Potato	endoplasmic reticulum	17.52	25.58
PGSC0003DMT400094539	Potato	golgi	17.13	24.07
PGSC0003DMT400017667	Potato	vacuole	13.97	21.41
PGSC0003DMT400009649	Potato	cytosol	28.59	16.74
PGSC0003DMT400000891	Potato	endoplasmic reticulum	17.39	16.48

Protein Annotations

Gene3D:1.10.10.10	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10	InterPro:Amino_oxidase	InterPro:FAD/NAD-bd_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:Homeobox-like_sf	InterPro:IPR007526
InterPro:IPR036188	InterPro:IPR036388	UniProt:M1BP46	PFAM:PF01593	PFAM:PF04433	EnsemblPlantsGene:PGSC0003DMG400019290
PGSC:PGSC0003DMG400019290	EnsemblPlants:PGSC0003DMT400049658	PFscan:PS50934	PANTHER:PTHR10742	PANTHER:PTHR10742:SF347	SUPFAM:SSF46689
SUPFAM:SSF51905	SUPFAM:SSF54373	InterPro:SWIRM	UniParc:UPI00029559F1	InterPro:WH-like_DNA-bd_sf	SEG:seg

Description

Flavin-containing amine oxidase domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019290]

Coordinates

chr7:+:53661036..53664495

Molecular Weight (calculated)

83928.0 Da

IEP (calculated)

8.079

GRAVY (calculated)

-0.213

Length

759 amino acids

Sequence
(BLAST)

001: MEIPNSGGSI SKRPVRKRIA SRNYDENLMD NFIDEQLGGP VRKKIRTKKD LEKETEKEAL IALSLGFPID DLLEEEIKAG VVSELDGKEQ NDYIVVRNHI
101: LAKWRENVHI WLNKGRIRET VSVEYEHLVA IAYDFLLSNG YINFGVSPSF VSNLPEEPSE GSVIIVGAGL AGLAAARQLM SFGFKVSILE GRHRPGGRVY
201: TEKMGWKGKF AAVDLGGSVI TGIHANPLGV LARQLSIPLH KVRDKCPLYK PDGAPVDAVV DSSIELIFNK LLDKVTELRK IVSGLATDVS LGSVLETLRR
301: LYCVAKTKEE KQLLHWHFAN LEYANAGCLS ELSAAYWDQD DPYEMGGDHC FLAGGNRGMI RALCKGVPIF YGKTVQTIKY GNEGVEVVAG DQLFQADMVL
401: CTVPLGVLKR RSIRFEPELP EKKLEAIDRL GFGLLNKVAM VFPHIFWGED LDTFGCLNHH SHRRGEYFLF YSYHTVSGGP VLIALVAGDA AQLFESTEPS
501: TLINRVINIL KGIYEPKGIS VPDPIQSICT KWGSDPFSFG SYSHIRVQSS GSDYDILAEN LGGRLFFAGE ATIRQHPATM HGAYLSGLRE ASHISQTMKA
601: RQNNPRRTVS KNVGPSNDVL EELFIKPDLA FGKFLFVFDP LTCDSKSLGL MRVTFGRSND EFNTEEADNM PQHLLNPSLQ LYTVVSREQA HELQLVKEGN
701: NCKLSELLKG LGLKLVGANG LGVQGHSLAA KIVNSRKGRR RSRSCTTKQK AGNSNSQLP

Best Arabidopsis Sequence Match ( AT3G13682.1 )
(BLAST)

001: MNSPASDETA PRRNRRKVSR KNYDENAMDE LIEKQLGGKA KKKYRTKQDL EKETETEALI ALSVGFPIDE LLEEEIRAGV VRELGGKEQN DYIVVRNHIV
101: ARWRGNVGIW LLKDQIRETV SSDFEHLISA AYDFLLFNGY INFGVSPLFA PYIPEEGTEG SVIVVGAGLA GLAAARQLLS FGFKVLVLEG RSRPGGRVYT
201: QKMGGKDRFA AVELGGSVIT GLHANPLGVL ARQLSIPLHK VRDNCPLYNS EGVLVDKVAD SNVEFGFNKL LDKVTEVREM MEGAAKKISL GEVLETLRVL
301: YGVAKDSEER KLFDWHLANL EYANAGCLSN LSAAYWDQDD PYEMGGDHCF LAGGNWRLIN ALAEGLPIIY GKSVDTIKYG DGGVEVISGS QIFQADMILC
401: TVPLGVLKKR SIKFEPELPR RKQAAIDRLG FGLLNKVAML FPSVFWGDEL DTFGCLNESS INRGEFFLFY AYHTVSGGPA LVALVAGEAA QRFECTEPSV
501: LLHRVLKKLR GIYGPKGVVV PDPIQTVCTR WGSDPLSYGS YSHVRVGSSG VDYDILAESV SNRLFFAGEA TTRQHPATMH GAYLSGLREA SKILHVANYL
601: RSNLKKPVQR YSGVNINVLE DMFKRPDIAI GKLSFVFNPL TDDPKSFGLV RVCFDNFEED PTNRLQLYTI LSREQANKIK ELDENSNESK LSCLMNTLGL
701: KLMGANSVLD TGGALISVIA NARRGRSRSH VVAGQCNLPL NPLHFN

Arabidopsis Description

LDL2Lysine-specific histone demethylase 1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.