CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55139	Canola	endoplasmic reticulum, extracellular	77.43	97.25
CDY51731	Canola	cytosol	97.13	96.99
AT3G13682.1	Thale cress	cytosol	86.87	85.12
VIT_19s0014g03430.t01	Wine grape	cytosol	69.9	67.68
KRH55370	Soybean	nucleus	66.48	65.41
PGSC0003DMT400049658	Potato	cytosol	67.03	64.56
Solyc07g063500.2.1	Tomato	cytosol, mitochondrion, nucleus	65.25	63.18
GSMUA_Achr5P26260_001	Banana	plastid	55.54	58.67
HORVU7Hr1G073020.3	Barley	cytosol, mitochondrion, peroxisome	54.58	55.11
TraesCS7B01G206700.1	Wheat	cytosol, nucleus, plasma membrane, plastid	56.22	54.08
TraesCS7A01G306400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	56.09	54.02
TraesCS7D01G303200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	55.95	53.89
Solyc07g063450.1.1	Tomato	cytosol	67.03	53.55
EES14528	Sorghum	mitochondrion, nucleus, plasma membrane, plastid	55.54	53.35
Zm00001d024647_P001	Maize	mitochondrion	55.4	53.08
Os08t0143400-01	Rice	nucleus	55.13	52.82
CDY46926	Canola	cytosol	47.61	49.86
CDY31848	Canola	nucleus	47.47	49.5
CDY00667	Canola	cytosol, plastid	50.62	40.48
CDX73929	Canola	nucleus, plastid	51.03	40.46
CDY42808	Canola	peroxisome	22.16	33.75
CDX83508	Canola	peroxisome	21.89	33.33
CDY55500	Canola	peroxisome	22.16	33.06
CDY53655	Canola	peroxisome	21.89	32.65
CDY14867	Canola	peroxisome	21.89	32.65
CDY30376	Canola	peroxisome	21.75	32.45
CDX67773	Canola	peroxisome	21.2	31.7
CDY16424	Canola	cytosol, peroxisome, plastid	20.11	29.22
CDY54438	Canola	cytosol, peroxisome, plastid	20.38	29.22
CDX98346	Canola	cytosol	21.61	28.78
CDY54281	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	17.78	26.53
CDY30206	Canola	mitochondrion	17.78	25.84
CDY43522	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	16.69	24.6
CDY06780	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	17.37	23.52
CDX70516	Canola	extracellular	14.64	22.72
CDX78534	Canola	extracellular	14.77	22.5
CDY22771	Canola	nucleus	33.65	15.6
CDY42542	Canola	nucleus	33.93	15.57

Protein Annotations

Gene3D:1.10.10.10	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10	GO:A0A078IUM7	UniProt:A0A078IUM7
InterPro:Amino_oxidase	EnsemblPlants:CDY55136	ProteinID:CDY55136	ProteinID:CDY55136.1	InterPro:FAD/NAD-bd_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00016431001	InterPro:Homeobox-like_sf	InterPro:IPR007526
InterPro:IPR036188	InterPro:IPR036388	PFAM:PF01593	PFAM:PF04433	PFscan:PS50934	PANTHER:PTHR10742
PANTHER:PTHR10742:SF347	SUPFAM:SSF46689	SUPFAM:SSF51905	SUPFAM:SSF54373	InterPro:SWIRM	UniParc:UPI0004EDC174
InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:	:

Description

BnaC01g44770DBnaC01g44770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUM7]

Coordinates

chrLK033377:+:23137..25414

Molecular Weight (calculated)

80778.6 Da

IEP (calculated)

7.493

GRAVY (calculated)

-0.225

Length

731 amino acids

Sequence
(BLAST)

001: MDTPSSEGSA PRRTLRRKAV RKNYDENAMD EPIETSKKKF KTKQQLEKET ETEALIALSV GFPIDELLED EIRAGVVREL GGKEQNDYIV VRNHIVARWR
101: SNVRVWLLKD RIRESVSSEC EHLISAAYDF LLFNGYINFG VSPLFNGYIP EDGSEGSVIV VGAGLAGLAA ARQLLSFGFK VVVLEGRSRP GGRVYTQKMG
201: GKDRFAAVEL GGSVITGLHA NPLGVLARQL SIPLHKVRDH CPLYNSEGEV VDKAVDSNVE FGFNKLLDKV AEVREMMGGA ANKVSLGEVL ETLRVLYGVA
301: KDSEERKLFD WHLANLEYAN AGCLSNLSAA YWDQDDPYEM GGDHCFLAGG NWRLINALAE GLPILYGKRV DAIKYGDRGV EVVSGSQRFQ GDMILCTVPL
401: GVLKKRCIKF EPELPRRKQA AIDRLGFGLL NKVAMLFPSV FWGDDLDTFG CLNDSSIDRG EFFLFYAYHT VSGGPALVAL VAGEAAQRFE CTEPSTLLHR
501: VMKKLRSIYG PKGVVVPDPI QTICTRWGSD PFSYGSYSHV RVGSSGVDYD ILAESVNNRL FFAGEATTRQ HPATMHGAYL SGLREASRIQ RVMNVSRGYP
601: RKPVQRYSGV SSDVLEDLFK RPDIASGQLS FVFNPSTDDP KSLGLVRVCF DSFEDDPTNR LQLYSILSWE QAQKLQEVGE SSNESKLTYM VNNLGSKLMG
701: GNAVLDTCGA LISVIANARK GRSRTRVVAR Q

Best Arabidopsis Sequence Match ( AT3G13682.1 )
(BLAST)

001: MNSPASDETA PRRNRRKVSR KNYDENAMDE LIEKQLGGKA KKKYRTKQDL EKETETEALI ALSVGFPIDE LLEEEIRAGV VRELGGKEQN DYIVVRNHIV
101: ARWRGNVGIW LLKDQIRETV SSDFEHLISA AYDFLLFNGY INFGVSPLFA PYIPEEGTEG SVIVVGAGLA GLAAARQLLS FGFKVLVLEG RSRPGGRVYT
201: QKMGGKDRFA AVELGGSVIT GLHANPLGVL ARQLSIPLHK VRDNCPLYNS EGVLVDKVAD SNVEFGFNKL LDKVTEVREM MEGAAKKISL GEVLETLRVL
301: YGVAKDSEER KLFDWHLANL EYANAGCLSN LSAAYWDQDD PYEMGGDHCF LAGGNWRLIN ALAEGLPIIY GKSVDTIKYG DGGVEVISGS QIFQADMILC
401: TVPLGVLKKR SIKFEPELPR RKQAAIDRLG FGLLNKVAML FPSVFWGDEL DTFGCLNESS INRGEFFLFY AYHTVSGGPA LVALVAGEAA QRFECTEPSV
501: LLHRVLKKLR GIYGPKGVVV PDPIQTVCTR WGSDPLSYGS YSHVRVGSSG VDYDILAESV SNRLFFAGEA TTRQHPATMH GAYLSGLREA SKILHVANYL
601: RSNLKKPVQR YSGVNINVLE DMFKRPDIAI GKLSFVFNPL TDDPKSFGLV RVCFDNFEED PTNRLQLYTI LSREQANKIK ELDENSNESK LSCLMNTLGL
701: KLMGANSVLD TGGALISVIA NARRGRSRSH VVAGQCNLPL NPLHFN

Arabidopsis Description

LDL2Lysine-specific histone demethylase 1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.