CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027014.1-P	Field mustard	cytosol	98.43	98.85
CDY46926	Canola	cytosol	97.29	97.71
AT1G62830.1	Thale cress	nucleus	86.02	71.45
VIT_03s0017g01000.t01	Wine grape	nucleus	63.2	65.44
KRH48462	Soybean	nucleus, plastid	33.81	64.4
KRH39215	Soybean	nucleus	67.05	56.02
GSMUA_Achr9P14930_001	Banana	nucleus	54.35	54.43
PGSC0003DMT400095293	Potato	nucleus	62.91	54.31
KRH48463	Soybean	cytosol, peroxisome	26.96	51.78
CDY55139	Canola	endoplasmic reticulum, extracellular	41.65	50.17
TraesCS6B01G348300.1	Wheat	nucleus	56.06	47.64
CDY55136	Canola	cytosol	49.5	47.47
TraesCS6A01G318300.1	Wheat	nucleus	55.63	47.45
CDY51731	Canola	cytosol	49.5	47.4
GSMUA_Achr3P06520_001	Banana	extracellular, nucleus, peroxisome	20.83	47.4
Zm00001d018102_P001	Maize	nucleus	56.06	46.29
OQU85392	Sorghum	nucleus	55.35	45.65
Os02t0755200-01	Rice	nucleus	55.21	45.58
TraesCS6D01G297500.1	Wheat	plastid	55.78	44.58
HORVU6Hr1G078160.1	Barley	plastid	55.21	44.33
CDY00667	Canola	cytosol, plastid	51.64	39.61
CDX73929	Canola	nucleus, plastid	51.93	39.48
CDY42808	Canola	peroxisome	21.4	31.25
CDX83508	Canola	peroxisome	21.4	31.25
CDY53655	Canola	peroxisome	21.26	30.41
CDY55500	Canola	peroxisome	21.26	30.41
CDY30376	Canola	peroxisome	20.97	30.0
CDY14867	Canola	peroxisome	20.97	30.0
CDX67773	Canola	peroxisome	20.68	29.65
CDY54438	Canola	cytosol, peroxisome, plastid	19.69	27.06
CDY16424	Canola	cytosol, peroxisome, plastid	19.4	27.04
CDX98346	Canola	cytosol	20.83	26.59
CDY30206	Canola	mitochondrion	18.97	26.44
CDY54281	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	18.4	26.33
CDY43522	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	17.83	25.2
CDY06780	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	18.26	23.7
CDX70516	Canola	extracellular	14.84	22.08
CDX78534	Canola	extracellular	14.98	21.88
CDY22771	Canola	nucleus	31.1	13.82
CDY42542	Canola	nucleus	31.1	13.68

Protein Annotations

KEGG:00231+1.-.-.-	KEGG:00592+1.-.-.-	KEGG:00633+1.-.-.-	KEGG:00780+1.-.-.-	KEGG:00860+1.-.-.-	KEGG:00950+1.-.-.-
KEGG:00981+1.-.-.-	Gene3D:1.10.10.10	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10	GO:A0A078H4S0
UniProt:A0A078H4S0	InterPro:Amino_oxidase	EnsemblPlants:CDY31848	ProteinID:CDY31848	ProteinID:CDY31848.1	InterPro:FAD/NAD-bd_sf
InterPro:Flavin_amine_oxidase	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016491	GO:GO:0019538	GO:GO:0051568	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00050560001	InterPro:Homeobox-like_sf
InterPro:IPR007526	InterPro:IPR036188	InterPro:IPR036388	PFAM:PF01593	PFAM:PF04433	PRINTS:PR00757
PFscan:PS50934	PANTHER:PTHR10742	SUPFAM:SSF46689	SUPFAM:SSF51905	SUPFAM:SSF54373	InterPro:SWIRM
UniParc:UPI0004EBB215	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:

Description

BnaC09g13010DBnaC09g13010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H4S0]

Coordinates

chrLK032280:-:438667..441729

Molecular Weight (calculated)

76838.4 Da

IEP (calculated)

4.876

GRAVY (calculated)

-0.268

Length

701 amino acids

Sequence
(BLAST)

001: MEENQEIRPE SPEKPKMATD NLTNAQASPM KEAATPSNTE LNSGKIDKDV AAADLNPTPA EKLQPSESDE EVDLPSISES LGEEESSDLV TEPQSQNPNP
101: LEPGPRARKR RRRKRFFTEI NANPAFPRNR RNSVGKELDS EAITAMSVGF PVNSLTEEEI EANVVSIIGG KEQANYIVVR NHIIALWRSN VSNWLTRDHA
201: LESIRLEHKT LVDTAYKFLL EHGYINFGLA PVIKEAKLRS FDGLEPPNVV VVGAGLAGLV AARQLLSMGF RVLVLEGRDR PGGRVKTRKM KGGDGVEAMA
301: DVGGSVLTGI NGNPLGVLAR QLGLPLHKVR DICPLYLPSG DLVDVGVDSK IEASFNKLLD RVCKLRQSMI EEIKSVDVPL GEALETFRLV YGVAEDQEER
401: MLFDWHLANL EYANATLLGN LSMAYWDQDD PYEMGGDHCF IPGGNETFVH ALAENLPVFY GNVVESIRYG SDGVVVYAGD KEFSCDMALC TVPLGVLKKG
501: GIGFVPELPE KKKEAIQRLG YGLLNKVAML FPYNFWGEEI DTFGRLTEDS STRGEFFLFY SYSSVSGGPL LVALVAGDAA ERFETMSPTD SVKRVLQILR
601: GIYHPKGIVV PDPVQALCSR WGQDKFSYGS YSYVAVGSSG DDYDILAESV GDGRVFFAGE ATNKQYPATM HGAFLSGMRE AANILRVARR RASESASNLA
701: K

Best Arabidopsis Sequence Match ( AT1G62830.1 )
(BLAST)

001: MSTETKETRP ETKPEDLGTH TTVDVPGEEP LGELIADDVN EVVSDASATE TDFSLSPSQS EQNIEEDGQN SLDDQSPLTE LQPLPLPPPL PVEARISESL
101: GEEESSDLVT EQQSQNPNAA EPGPRARKRR RRKRFFTEIN ANPAFSRNRR TSVGKEVDSE ALIAMSVGFP VYSLTEEEIE ANVVSIIGGK DQANYIVVRN
201: HIIALWRSNV SNWLTRDHAL ESIRAEHKTL VDTAYNFLLE HGYINFGLAP VIKEAKLRSF DGVEPPNVVV VGAGLAGLVA ARQLLSMGFR VLVLEGRDRP
301: GGRVKTRKMK GGDGVEAMAD VGGSVLTGIN GNPLGVLARQ LGLPLHKVRD ICPLYLPNGE LADASVDSKI EASFNKLLDR VCKLRQSMIE ENKSVDVPLG
401: EALETFRLVY GVAEDQQERM LLDWHLANLE YANATLLGNL SMAYWDQDDP YEMGGDHCFI PGGNEIFVHA LAENLPIFYG STVESIRYGS NGVLVYTGNK
501: EFHCDMALCT VPLGVLKKGS IEFYPELPHK KKEAIQRLGF GLLNKVAMLF PCNFWGEEID TFGRLTEDPS TRGEFFLFYS YSSVSGGPLL VALVAGDAAE
601: RFETLSPTDS VKRVLQILRG IYHPKGIVVP DPVQALCSRW GQDKFSYGSY SYVAVGSSGD DYDILAESVG DGRVFFAGEA TNRQYPATMH GAFLSGMREA
701: ANILRVARRR ASSSALNPNQ ICIDKEEEVD EEEDRCLDQL FETPDLTFGN FSVLFTPNSD EPESMSLLRV RIQMEKPESG LWLYGLVTRK QAIELGEMDG
801: DELRNEYLRE KLGLVPVERK SLSQEGESMI SSLKAARLNR QIFD

Arabidopsis Description

LDL1Lysine-specific histone demethylase 1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.