CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
peroxisome 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, peroxisome, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	peroxisome
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39215	Soybean	nucleus	95.11	41.72
VIT_03s0017g01000.t01	Wine grape	nucleus	64.13	34.86
Bra027014.1-P	Field mustard	cytosol	64.4	33.95
CDY46926	Canola	cytosol	64.4	33.95
CDY31848	Canola	nucleus	64.4	33.81
PGSC0003DMT400095293	Potato	nucleus	64.4	29.19
AT1G62830.1	Thale cress	nucleus	64.67	28.2
GSMUA_Achr9P14930_001	Banana	nucleus	52.45	27.57
TraesCS6A01G318300.1	Wheat	nucleus	51.09	22.87
TraesCS6B01G348300.1	Wheat	nucleus	51.09	22.79
Zm00001d018102_P001	Maize	nucleus	51.63	22.38
Os02t0755200-01	Rice	nucleus	51.36	22.26
OQU85392	Sorghum	nucleus	51.09	22.12
TraesCS6D01G297500.1	Wheat	plastid	51.09	21.44
HORVU6Hr1G078160.1	Barley	plastid	50.27	21.19
KRH55370	Soybean	nucleus	42.39	21.0
KRH71619	Soybean	cytosol	46.2	19.41
KRH20055	Soybean	cytosol	16.03	11.97
KRH73583	Soybean	cytosol, peroxisome, plastid	15.76	11.91
KRH45972	Soybean	cytosol, mitochondrion, peroxisome, plastid	15.76	11.84
KRG98020	Soybean	cytosol	15.76	11.76
KRH72905	Soybean	peroxisome	15.76	11.74
KRG99036	Soybean	plasma membrane, vacuole	15.76	11.65
KRH14536	Soybean	cytosol, mitochondrion, peroxisome, plastid	15.22	11.45
KRH17261	Soybean	cytosol, peroxisome, plasma membrane	15.22	11.34
KRH69303	Soybean	vacuole	8.97	8.57
KRH32977	Soybean	plasma membrane	10.33	7.6
KRH39911	Soybean	plasma membrane	9.51	7.53
KRH19156	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	10.87	7.43
KRH02713	Soybean	golgi	10.6	7.36
KRH12386	Soybean	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	11.41	7.23
KRH13982	Soybean	plasma membrane	9.78	7.19
KRH37387	Soybean	golgi	11.41	7.0
KRH05909	Soybean	nucleus	27.45	5.3
KRH17390	Soybean	nucleus	27.17	5.28
KRH48463	Soybean	cytosol, peroxisome	0.0	0.0
GSMUA_Achr3P06520_001	Banana	extracellular, nucleus, peroxisome	0.0	0.0

Protein Annotations

Gene3D:1.10.10.10	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	UniProt:A0A0R0J0T5	EMBL:ACUP02004238	InterPro:Amino_oxidase
InterPro:FAD/NAD-bd_sf	EnsemblPlantsGene:GLYMA_07G0901002	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114
InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR036188	InterPro:IPR036388	EnsemblPlants:KRH48462	ProteinID:KRH48462
ProteinID:KRH48462.1	PFAM:PF01593	PFAM:PF04433	PFscan:PS50934	PANTHER:PTHR10742	PANTHER:PTHR10742:SF260
SUPFAM:SSF46689	SUPFAM:SSF51905	InterPro:SWIRM	UniParc:UPI0006ED7827	InterPro:WH-like_DNA-bd_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:8434337..8435442

Molecular Weight (calculated)

40535.4 Da

IEP (calculated)

7.257

GRAVY (calculated)

-0.376

Length

368 amino acids

Sequence
(BLAST)

001: MAEPPSPPPP PPPQSVSPEN DVAMSPHNLD LQNSSEDPDS SFPTQTTPEP AVPDSPDSTT TRPDPNPPPR KRRRRKKFFT ELTTGTSTRR NDVAKDCDVE
101: ALIAISVGFP VDSLTEEEIE ANVVSTVGGS EQSNYIVVRN HILARWRSNV SVWLTHDQAL RSIRSEHKGL VETAYRFLLE HGYINFGLAH EIKTLKQKPF
201: DGSYRGTVIV IGAGFAGLVA ARQLVFMGFK VVILEGRTRP GGRVKTKKMS GDGVEAAADF GGSVLTGING NPLGVLARQL GLPLHKVRDI CPLYLPDGRS
301: VDSEVDSRVE VSFNKLLERV CKLRQAMIEE VKSVDVPLGT ALEAFRRVYK VAEDKEERML LNWHLANL

Best Arabidopsis Sequence Match ( AT1G62830.1 )
(BLAST)

001: MSTETKETRP ETKPEDLGTH TTVDVPGEEP LGELIADDVN EVVSDASATE TDFSLSPSQS EQNIEEDGQN SLDDQSPLTE LQPLPLPPPL PVEARISESL
101: GEEESSDLVT EQQSQNPNAA EPGPRARKRR RRKRFFTEIN ANPAFSRNRR TSVGKEVDSE ALIAMSVGFP VYSLTEEEIE ANVVSIIGGK DQANYIVVRN
201: HIIALWRSNV SNWLTRDHAL ESIRAEHKTL VDTAYNFLLE HGYINFGLAP VIKEAKLRSF DGVEPPNVVV VGAGLAGLVA ARQLLSMGFR VLVLEGRDRP
301: GGRVKTRKMK GGDGVEAMAD VGGSVLTGIN GNPLGVLARQ LGLPLHKVRD ICPLYLPNGE LADASVDSKI EASFNKLLDR VCKLRQSMIE ENKSVDVPLG
401: EALETFRLVY GVAEDQQERM LLDWHLANLE YANATLLGNL SMAYWDQDDP YEMGGDHCFI PGGNEIFVHA LAENLPIFYG STVESIRYGS NGVLVYTGNK
501: EFHCDMALCT VPLGVLKKGS IEFYPELPHK KKEAIQRLGF GLLNKVAMLF PCNFWGEEID TFGRLTEDPS TRGEFFLFYS YSSVSGGPLL VALVAGDAAE
601: RFETLSPTDS VKRVLQILRG IYHPKGIVVP DPVQALCSRW GQDKFSYGSY SYVAVGSSGD DYDILAESVG DGRVFFAGEA TNRQYPATMH GAFLSGMREA
701: ANILRVARRR ASSSALNPNQ ICIDKEEEVD EEEDRCLDQL FETPDLTFGN FSVLFTPNSD EPESMSLLRV RIQMEKPESG LWLYGLVTRK QAIELGEMDG
801: DELRNEYLRE KLGLVPVERK SLSQEGESMI SSLKAARLNR QIFD

Arabidopsis Description

LDL1Lysine-specific histone demethylase 1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.