CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P06520_001	Banana	extracellular, nucleus, peroxisome	53.97	63.96
KRH39215	Soybean	nucleus	93.97	40.88
VIT_03s0017g01000.t01	Wine grape	nucleus	54.25	29.25
PGSC0003DMT400095293	Potato	nucleus	64.93	29.19
AT1G62830.1	Thale cress	nucleus	65.21	28.2
TraesCS6B01G348300.1	Wheat	nucleus	62.47	27.64
TraesCS6A01G318300.1	Wheat	nucleus	62.19	27.62
Bra027014.1-P	Field mustard	cytosol	51.78	27.08
CDY46926	Canola	cytosol	51.78	27.08
CDY31848	Canola	nucleus	51.78	26.96
TraesCS6D01G297500.1	Wheat	plastid	62.19	25.88
Zm00001d018102_P001	Maize	nucleus	59.73	25.68
Os02t0755200-01	Rice	nucleus	59.73	25.68
HORVU6Hr1G078160.1	Barley	plastid	61.37	25.66
OQU85392	Sorghum	nucleus	59.18	25.41
KRH55370	Soybean	nucleus	50.96	25.03
KRH71619	Soybean	cytosol	58.63	24.43
GSMUA_Achr9P14930_001	Banana	nucleus	46.3	24.14
KRG99036	Soybean	plasma membrane, vacuole	24.11	17.67
KRH45972	Soybean	cytosol, mitochondrion, peroxisome, plastid	23.56	17.55
KRH73583	Soybean	cytosol, peroxisome, plastid	23.29	17.45
KRG98020	Soybean	cytosol	23.29	17.24
KRH14536	Soybean	cytosol, mitochondrion, peroxisome, plastid	23.01	17.18
KRH20055	Soybean	cytosol	23.01	17.04
KRH72905	Soybean	peroxisome	21.92	16.19
KRH17261	Soybean	cytosol, peroxisome, plasma membrane	21.37	15.79
KRH02713	Soybean	golgi	20.55	14.15
KRH19156	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	20.55	13.94
KRH32977	Soybean	plasma membrane	18.36	13.4
KRH39911	Soybean	plasma membrane	16.99	13.33
KRH13982	Soybean	plasma membrane	17.81	12.97
KRH12386	Soybean	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	20.27	12.74
KRH37387	Soybean	golgi	20.55	12.5
KRH69303	Soybean	vacuole	7.67	7.27
KRH17390	Soybean	nucleus	36.71	7.07
KRH05909	Soybean	nucleus	36.44	6.97
KRH48462	Soybean	nucleus, plastid	0.0	0.0

Protein Annotations

MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10	UniProt:A0A0R0JBZ6	EMBL:ACUP02004239	InterPro:Amino_oxidase
InterPro:FAD/NAD-bd_sf	EnsemblPlantsGene:GLYMA_07G0901001	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0055114	InterPro:IPR036188
EnsemblPlants:KRH48463	ProteinID:KRH48463	ProteinID:KRH48463.1	PFAM:PF01593	PANTHER:PTHR10742	PANTHER:PTHR10742:SF353
SUPFAM:SSF51905	SUPFAM:SSF54373	UniParc:UPI0006ED7D9C	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:+:8435577..8436847

Molecular Weight (calculated)

40006.9 Da

IEP (calculated)

5.761

GRAVY (calculated)

-0.052

Length

365 amino acids

Sequence
(BLAST)

001: TVECVKYGSD GVLVCAAGQE FRGDVALCTV PLGVLKKGDI EFVPELPQRK KDAIHRLGFG LLNKVAILFP YNFWGGDIDT FGHLTEDLSM RGEFFLFYSY
101: SSVSGGPLLV ALVAGEAAIR FEMMSPVESV KRVLDILKDI FNPKGIVVPD PVQAVCTRWG KDHFAYGSYS YVAVGSSGDD YDILAESVGD GRVFFAGEAT
201: SKQYPATMHG AFLSGMREAA NILRVAKRRS SMTIDTTKSV NQENDDLNKL FVKPDLTFGS FSALFDLNLN DHDSSSLLRV KIGGVVLDSG SLYLYAWLSK
301: KRVIELSQVE GDENRMRMLN RNFGVSLVGR KGLSSAAESL IANIKLSRPN FNETENGLMA EKENS

Best Arabidopsis Sequence Match ( AT1G62830.1 )
(BLAST)

001: MSTETKETRP ETKPEDLGTH TTVDVPGEEP LGELIADDVN EVVSDASATE TDFSLSPSQS EQNIEEDGQN SLDDQSPLTE LQPLPLPPPL PVEARISESL
101: GEEESSDLVT EQQSQNPNAA EPGPRARKRR RRKRFFTEIN ANPAFSRNRR TSVGKEVDSE ALIAMSVGFP VYSLTEEEIE ANVVSIIGGK DQANYIVVRN
201: HIIALWRSNV SNWLTRDHAL ESIRAEHKTL VDTAYNFLLE HGYINFGLAP VIKEAKLRSF DGVEPPNVVV VGAGLAGLVA ARQLLSMGFR VLVLEGRDRP
301: GGRVKTRKMK GGDGVEAMAD VGGSVLTGIN GNPLGVLARQ LGLPLHKVRD ICPLYLPNGE LADASVDSKI EASFNKLLDR VCKLRQSMIE ENKSVDVPLG
401: EALETFRLVY GVAEDQQERM LLDWHLANLE YANATLLGNL SMAYWDQDDP YEMGGDHCFI PGGNEIFVHA LAENLPIFYG STVESIRYGS NGVLVYTGNK
501: EFHCDMALCT VPLGVLKKGS IEFYPELPHK KKEAIQRLGF GLLNKVAMLF PCNFWGEEID TFGRLTEDPS TRGEFFLFYS YSSVSGGPLL VALVAGDAAE
601: RFETLSPTDS VKRVLQILRG IYHPKGIVVP DPVQALCSRW GQDKFSYGSY SYVAVGSSGD DYDILAESVG DGRVFFAGEA TNRQYPATMH GAFLSGMREA
701: ANILRVARRR ASSSALNPNQ ICIDKEEEVD EEEDRCLDQL FETPDLTFGN FSVLFTPNSD EPESMSLLRV RIQMEKPESG LWLYGLVTRK QAIELGEMDG
801: DELRNEYLRE KLGLVPVERK SLSQEGESMI SSLKAARLNR QIFD

Arabidopsis Description

LDL1Lysine-specific histone demethylase 1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.