Factsheet for VIT_03s0017g01000.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48462	Soybean	nucleus, plastid	34.86	64.13
Bra027014.1-P	Field mustard	cytosol	65.29	63.32
CDY46926	Canola	cytosol	65.29	63.32
CDY31848	Canola	nucleus	65.44	63.2
PGSC0003DMT400095293	Potato	nucleus	75.18	62.68
GSMUA_Achr9P14930_001	Banana	nucleus	61.0	59.0
KRH39215	Soybean	nucleus	70.75	57.09
KRH48463	Soybean	cytosol, peroxisome	29.25	54.25
AT1G62830.1	Thale cress	nucleus	65.58	52.61
TraesCS6A01G318300.1	Wheat	nucleus	61.74	50.85
TraesCS6B01G348300.1	Wheat	nucleus	61.74	50.67
Zm00001d018102_P001	Maize	nucleus	61.89	49.35
OQU85392	Sorghum	nucleus	61.45	48.94
Os02t0755200-01	Rice	nucleus	60.86	48.53
HORVU6Hr1G078160.1	Barley	plastid	61.6	47.77
TraesCS6D01G297500.1	Wheat	plastid	61.74	47.66
VIT_19s0014g03430.t01	Wine grape	cytosol	52.88	47.42
GSMUA_Achr3P06520_001	Banana	extracellular, nucleus, peroxisome	21.27	46.75
VIT_13s0019g04820.t01	Wine grape	nucleus	53.91	35.58
VIT_12s0028g01120.t01	Wine grape	cytosol	22.6	31.22
VIT_01s0127g00770.t01	Wine grape	cytosol	4.14	30.77
VIT_04s0043g00220.t01	Wine grape	plastid	21.12	29.18
VIT_11s0016g02180.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	19.2	25.05
VIT_01s0127g00750.t01	Wine grape	golgi, vacuole	16.84	23.31
VIT_01s0127g00800.t01	Wine grape	extracellular, plasma membrane, vacuole	16.25	22.22
VIT_17s0053g00880.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	8.27	21.96
VIT_13s0064g00390.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	16.1	21.67
VIT_01s0127g00780.t01	Wine grape	golgi, vacuole	15.36	20.59
VIT_18s0001g13650.t01	Wine grape	nucleus	15.51	8.96
VIT_18s0001g13640.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	0.3	0.38

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100245322	wikigene:100245322	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10
EMBL:AM484571	InterPro:Amino_oxidase	ProteinID:CAN68725	ProteinID:CAN68725.1	ProteinID:CCB58001	ProteinID:CCB58001.1
UniProt:F6HTJ1	InterPro:FAD/NAD-bd_sf	EMBL:FN596248	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016491	GO:GO:0016575	GO:GO:0019538	GO:GO:0048364	GO:GO:0051568
GO:GO:0055114	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR036188	InterPro:IPR036388	EntrezGene:LOC100245322
wikigene:LOC100245322	PFAM:PF01593	PFAM:PF04433	PFscan:PS50934	PANTHER:PTHR10742	PANTHER:PTHR10742:SF353
SUPFAM:SSF46689	SUPFAM:SSF51905	SUPFAM:SSF54373	InterPro:SWIRM	UniParc:UPI00015CBC37	ArrayExpress:VIT_03s0017g01000
EnsemblPlantsGene:VIT_03s0017g01000	EnsemblPlants:VIT_03s0017g01000.t01	unigene:Vvi.16971	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_002265069	RefSeq:XP_002265069.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:+:16377478..16379794

Molecular Weight (calculated)

74760.7 Da

IEP (calculated)

6.659

GRAVY (calculated)

-0.169

Length

677 amino acids

Sequence
(BLAST)

001: MEPQDLSDNP TAAVSGESTP ENQSSPPETT LEVRVSDSQL DETSEPPPKK RRRRKKQFPE MISSAAAVTG LRLLRPHPKS SIYSEKIMDD IIGMQINDSP
101: ALSKTHRRRR RIADLAKEVD VEALVAISVG FPVDSLTEEE IEANVVTAIG GAEQANYIVV RNHILARWRW SVSTWLTRDH AMESIRSEHR NSVNSAYSFL
201: LEHGYINFGL APAIREVQLK PNDSLKASVI IVGAGLAGLA AARQLIFLGF KVLILEGRSR PGGRVRTRKM KRMDGCGVIA AADLGGSVLT GINGNPLGVL
301: ARQLGFPLHK VRDICPLYLP DGRMVNSEID SRVETSFNRL LDRVCKLRQA MMEEVKSADV SLGTALEAFR RVYKVAEDPQ ERMLLNWHLA NLEYANASLM
401: SDLSMAYWDQ DDPYEMGGDH CFIPGGNERF VRALAEDLPI FYSQTVESVR YGADGVSVHA GGQEFRGDMV LCTVPLGVLK KGTIDFLPQL PQRKRDAIQR
501: IGFGLLNKVA MLFPYDFWGG EIDTFGHLTE ESTMRGEFFL FYSYSSVSGG PLLVALVAGE AAINFEMMSP VEAVRRVLDI LKGIFNPKGI AVPDPIQVVC
601: TRWGKDRFTY GSYSYVAIGS SGDDYDILAE SVGDGRVFFA GEATNKQYPA TMHGAFLSGM REAANILRVA NRRSLLS

Best Arabidopsis Sequence Match ( AT1G62830.1 )
(BLAST)

001: MSTETKETRP ETKPEDLGTH TTVDVPGEEP LGELIADDVN EVVSDASATE TDFSLSPSQS EQNIEEDGQN SLDDQSPLTE LQPLPLPPPL PVEARISESL
101: GEEESSDLVT EQQSQNPNAA EPGPRARKRR RRKRFFTEIN ANPAFSRNRR TSVGKEVDSE ALIAMSVGFP VYSLTEEEIE ANVVSIIGGK DQANYIVVRN
201: HIIALWRSNV SNWLTRDHAL ESIRAEHKTL VDTAYNFLLE HGYINFGLAP VIKEAKLRSF DGVEPPNVVV VGAGLAGLVA ARQLLSMGFR VLVLEGRDRP
301: GGRVKTRKMK GGDGVEAMAD VGGSVLTGIN GNPLGVLARQ LGLPLHKVRD ICPLYLPNGE LADASVDSKI EASFNKLLDR VCKLRQSMIE ENKSVDVPLG
401: EALETFRLVY GVAEDQQERM LLDWHLANLE YANATLLGNL SMAYWDQDDP YEMGGDHCFI PGGNEIFVHA LAENLPIFYG STVESIRYGS NGVLVYTGNK
501: EFHCDMALCT VPLGVLKKGS IEFYPELPHK KKEAIQRLGF GLLNKVAMLF PCNFWGEEID TFGRLTEDPS TRGEFFLFYS YSSVSGGPLL VALVAGDAAE
601: RFETLSPTDS VKRVLQILRG IYHPKGIVVP DPVQALCSRW GQDKFSYGSY SYVAVGSSGD DYDILAESVG DGRVFFAGEA TNRQYPATMH GAFLSGMREA
701: ANILRVARRR ASSSALNPNQ ICIDKEEEVD EEEDRCLDQL FETPDLTFGN FSVLFTPNSD EPESMSLLRV RIQMEKPESG LWLYGLVTRK QAIELGEMDG
801: DELRNEYLRE KLGLVPVERK SLSQEGESMI SSLKAARLNR QIFD

Arabidopsis Description

LDL1Lysine-specific histone demethylase 1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.