Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_19s0014g03430.t01 | Wine grape | cytosol | 4.39 | 3.05 |
| VIT_13s0019g04820.t01 | Wine grape | nucleus | 5.92 | 3.02 |
| VIT_13s0064g00390.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 1.15 | 1.19 |
| VIT_01s0127g00770.t01 | Wine grape | cytosol | 0.19 | 1.1 |
| VIT_04s0043g00220.t01 | Wine grape | plastid | 0.95 | 1.02 |
| VIT_12s0028g01120.t01 | Wine grape | cytosol | 0.95 | 1.02 |
| VIT_01s0127g00780.t01 | Wine grape | golgi, vacuole | 0.57 | 0.59 |
| VIT_01s0127g00750.t01 | Wine grape | golgi, vacuole | 0.38 | 0.41 |
| VIT_01s0127g00800.t01 | Wine grape | extracellular, plasma membrane, vacuole | 0.38 | 0.4 |
| VIT_03s0017g01000.t01 | Wine grape | nucleus | 0.38 | 0.3 |
| VIT_11s0016g02180.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole | 0.19 | 0.19 |
| VIT_17s0053g00880.t01 | Wine grape | endoplasmic reticulum, peroxisome, plasma membrane | 0.0 | 0.0 |
| VIT_18s0001g13650.t01 | Wine grape | nucleus | 0.0 | 0.0 |
Protein Annotations
| ArrayExpress:VIT_18s0001g13640 | EMBL:FN595227 | EnsemblPlants:VIT_18s0001g13640.t01 | EnsemblPlantsGene:VIT_18s0001g13640 | InterPro:IPR035441 | InterPro:TFIIS/LEDGF_dom_sf |
| PANTHER:PTHR10742 | PANTHER:PTHR10742:SF354 | ProteinID:CCB46004 | ProteinID:CCB46004.1 | SEG:seg | SUPFAM:SSF47676 |
| UniParc:UPI0002109A62 | UniProt:F6GZR2 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr18:-:11636802..11640737
Molecular Weight (calculated)
57629.1 Da
IEP (calculated)
9.873
GRAVY (calculated)
-0.550
Length
524 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSNAKTTAG RLHLAKELLT FPVEALKSFA GTKEGLCTLN SWILDSMGKD GTQLLRHCVR LLVLVSTDLI AVRLSGIGKT VKEKVCVHTS RDIRAIASQL
101: VNVWIEVFRK EKASNGGLKL LKQTTASNSA KGKSFKDLAS GKPPIRVHHG ALDFKGSSQV SASARSHSPS SASIKKDNGK PVKLESMTNS KPDGNQSRSP
201: GSVGRMDVEG EEGNNLMSEE EKVAFAAAEA ARAAALAAAE AYASEAKSNT SLQLPKIPSF HKFARREQYA QMDESDLRRK WSGGVSGRQD CISEIDSRNC
301: RVRNWSVDFP AACVNLESSR MSADNHSQRS HSNDIACPLN FREHSGESAA VDSSLFTKAW VDSAGSVGIK DYHAIERWQS QAAAADSDFY QSTRHIRDEE
401: DSNTISQPPT WKHDRQANES SVSHVTVNKE LVKNQPRGAE NIKQAVVDYV GSLLMPLYKA RKIDKEGYKS IMKKSATKVM EQATDVEKTM AVSEFLDFKR
501: RNKIRSFVDK LIERHMAMNP VGNP
101: VNVWIEVFRK EKASNGGLKL LKQTTASNSA KGKSFKDLAS GKPPIRVHHG ALDFKGSSQV SASARSHSPS SASIKKDNGK PVKLESMTNS KPDGNQSRSP
201: GSVGRMDVEG EEGNNLMSEE EKVAFAAAEA ARAAALAAAE AYASEAKSNT SLQLPKIPSF HKFARREQYA QMDESDLRRK WSGGVSGRQD CISEIDSRNC
301: RVRNWSVDFP AACVNLESSR MSADNHSQRS HSNDIACPLN FREHSGESAA VDSSLFTKAW VDSAGSVGIK DYHAIERWQS QAAAADSDFY QSTRHIRDEE
401: DSNTISQPPT WKHDRQANES SVSHVTVNKE LVKNQPRGAE NIKQAVVDYV GSLLMPLYKA RKIDKEGYKS IMKKSATKVM EQATDVEKTM AVSEFLDFKR
501: RNKIRSFVDK LIERHMAMNP VGNP
0001: MDGKEKKSGS KRGSKVFQFD DDADDDEPIG SLLEIMKHKS SKKDKVETES TGKQRQKQVV EKKLSALGKD SEDMDDTLAS FRKRLKGNKK GVESGTSRVR
0101: NHEGVDTVTN SNLKPIEEAN KNEVQSVLLR ENGASNSIQK CASETGTLLH KFSGKDKAAS PSHEKVETVS SEKEADVFHQ ITKEESEIPM SEKAVELSRV
0201: SVPMPDVHGE VNCTIAPDKH IHLGEPTSES GYYREKNLVM CDCGTQFNFE DRSFESNTQV TLCQKCKYSS HHNASNGGGI QVNTLEDGTA QASPVSIIPC
0301: EDENFRGDAI SLPNSGKPST LQRPERIAKK RKLGNMVYEG DVKWENEQGF LDCQSDKSFK GSDKCGFVPS ISKEIEIGRA AAVTAGLKAQ SVSPIEKIIL
0401: KEVLKRKGSN QEYLVCRNSI LGLWSKNVSR ILPVTECGVT GGPSESELPS ASLIREVYKF LDQRGYINAG ISSVNGKAAS STNQDYDLLQ GRQLEESSMA
0501: SVADSEEGVA FILGQVKAVE STSEGKKCAL QNDERDLVGC ATSEMLESIS KKCEASIIDD NKRSVSMNAL QDSTASNVEK HPETFSVAKP ALSSTLSSAH
0601: SNQMRGRDCV PCEVIDEKKV IVIGAGPAGL TAARHLQRQG FSVTVLEARS RVGGRVFTDR SSLSVPVDLG ASIITGIEAD VPSERMPDPS VLVCNQLGLE
0701: LSVLHGFCPL YDTVTGKKVP AELDDALQAE FNSLIDDVDL LVEEIGKERA NKMSLEDGLE YGLQRLRMPH DKVNIDKFGL LNSSSKTGIR GPFMQDESWK
0801: DDFLNPLERR VMNWHFAHTE YGCAAVLKEV SLPHWNQDEF YGGFGGPHAM IKGGYSRVVE SLAEGLDIHL NKIVSDVSYV SDVSAMDNSK HKVRVSTSNG
0901: CEYLGDAVLV TVPLGCLKAE TIKFSPPLPD WKYASIKQLG FGVLNKVVLE FPTVFWDDSV DYFGATAEET DLRGECFMFW NVKKTVGAPV LIALVVGKAA
1001: FEYTNKSKSE HVNHAMMVLR KLFGGDLVPD PVASVVTDWG TDPYSYGAYS YVAIGASGED YDVLGRPVQN CLFFAGEATC KEHPDTVGGA MMTGVREAVR
1101: IIDILRSGND YTAEIETLEK AQRKSVPVRD EVRDLIKRLE VVELSNVLAR QSLLRNMFFS AKTTVGRLHL AKELLNLPGE TLKSFAGTKE GLAVLNSWIL
1201: DSMGKNGTQL LRHCVHILVR VTSDLFALRL SGIGKTVKEK VCAHTSRDIR AIASQLVNVW LDLYRKEKAN SGKKSLRQAN TTNTSRIRRK LNSPDTDSKG
1301: KLSNGNDVKT DEEFEDNQLP MSEEEKAVFA EAEAARAAAE AAAKAFSEAY HNTSLQLPKI PSFHKFARRE QYAKMDESDF RKKFPGNVLG RQDCMSEIDS
1401: RNCKVRDWYD FPASCLDLDS ARIPVDNYSQ PSHSNELVSH SKFRECSGES VAADTSFLTG AWVDTGGSSD GFKDSQAIDR WQSQAAAADP EFFNRTLHIK
1501: DEEDSIACST GPPSWKHDQR ANECSVSQVT VNKEPHKNHI RSADRLKQGV VDFVASLLMA PYRAKKIDRD VYKSIMKKTA TKVMQHTTDV EKAMAVTQFL
1601: DSKRKNKIRD FVDKQVDKYM VIPQVPKP
0101: NHEGVDTVTN SNLKPIEEAN KNEVQSVLLR ENGASNSIQK CASETGTLLH KFSGKDKAAS PSHEKVETVS SEKEADVFHQ ITKEESEIPM SEKAVELSRV
0201: SVPMPDVHGE VNCTIAPDKH IHLGEPTSES GYYREKNLVM CDCGTQFNFE DRSFESNTQV TLCQKCKYSS HHNASNGGGI QVNTLEDGTA QASPVSIIPC
0301: EDENFRGDAI SLPNSGKPST LQRPERIAKK RKLGNMVYEG DVKWENEQGF LDCQSDKSFK GSDKCGFVPS ISKEIEIGRA AAVTAGLKAQ SVSPIEKIIL
0401: KEVLKRKGSN QEYLVCRNSI LGLWSKNVSR ILPVTECGVT GGPSESELPS ASLIREVYKF LDQRGYINAG ISSVNGKAAS STNQDYDLLQ GRQLEESSMA
0501: SVADSEEGVA FILGQVKAVE STSEGKKCAL QNDERDLVGC ATSEMLESIS KKCEASIIDD NKRSVSMNAL QDSTASNVEK HPETFSVAKP ALSSTLSSAH
0601: SNQMRGRDCV PCEVIDEKKV IVIGAGPAGL TAARHLQRQG FSVTVLEARS RVGGRVFTDR SSLSVPVDLG ASIITGIEAD VPSERMPDPS VLVCNQLGLE
0701: LSVLHGFCPL YDTVTGKKVP AELDDALQAE FNSLIDDVDL LVEEIGKERA NKMSLEDGLE YGLQRLRMPH DKVNIDKFGL LNSSSKTGIR GPFMQDESWK
0801: DDFLNPLERR VMNWHFAHTE YGCAAVLKEV SLPHWNQDEF YGGFGGPHAM IKGGYSRVVE SLAEGLDIHL NKIVSDVSYV SDVSAMDNSK HKVRVSTSNG
0901: CEYLGDAVLV TVPLGCLKAE TIKFSPPLPD WKYASIKQLG FGVLNKVVLE FPTVFWDDSV DYFGATAEET DLRGECFMFW NVKKTVGAPV LIALVVGKAA
1001: FEYTNKSKSE HVNHAMMVLR KLFGGDLVPD PVASVVTDWG TDPYSYGAYS YVAIGASGED YDVLGRPVQN CLFFAGEATC KEHPDTVGGA MMTGVREAVR
1101: IIDILRSGND YTAEIETLEK AQRKSVPVRD EVRDLIKRLE VVELSNVLAR QSLLRNMFFS AKTTVGRLHL AKELLNLPGE TLKSFAGTKE GLAVLNSWIL
1201: DSMGKNGTQL LRHCVHILVR VTSDLFALRL SGIGKTVKEK VCAHTSRDIR AIASQLVNVW LDLYRKEKAN SGKKSLRQAN TTNTSRIRRK LNSPDTDSKG
1301: KLSNGNDVKT DEEFEDNQLP MSEEEKAVFA EAEAARAAAE AAAKAFSEAY HNTSLQLPKI PSFHKFARRE QYAKMDESDF RKKFPGNVLG RQDCMSEIDS
1401: RNCKVRDWYD FPASCLDLDS ARIPVDNYSQ PSHSNELVSH SKFRECSGES VAADTSFLTG AWVDTGGSSD GFKDSQAIDR WQSQAAAADP EFFNRTLHIK
1501: DEEDSIACST GPPSWKHDQR ANECSVSQVT VNKEPHKNHI RSADRLKQGV VDFVASLLMA PYRAKKIDRD VYKSIMKKTA TKVMQHTTDV EKAMAVTQFL
1601: DSKRKNKIRD FVDKQVDKYM VIPQVPKP
Arabidopsis Description
LDL3Lysine-specific histone demethylase 1 homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:F4JLS1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.