Factsheet for VIT_19s0014g03430.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55370	Soybean	nucleus	70.6	71.74
AT3G13682.1	Thale cress	cytosol	69.54	70.38
PGSC0003DMT400049658	Potato	cytosol	70.73	70.36
CDY55139	Canola	endoplasmic reticulum, extracellular	53.91	69.93
CDY55136	Canola	cytosol	67.68	69.9
CDY51731	Canola	cytosol	67.28	69.4
Bra021500.1-P	Field mustard	cytosol	67.15	69.36
Solyc07g063500.2.1	Tomato	cytosol, mitochondrion, nucleus	67.95	67.95
GSMUA_Achr5P26260_001	Banana	plastid	57.35	62.57
Solyc07g063450.1.1	Tomato	cytosol	70.6	58.25
HORVU7Hr1G073020.3	Barley	cytosol, mitochondrion, peroxisome	55.23	57.6
TraesCS7D01G303200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	56.82	56.52
TraesCS7B01G206700.1	Wheat	cytosol, nucleus, plasma membrane, plastid	56.69	56.32
TraesCS7A01G306400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	56.42	56.13
EES14528	Sorghum	mitochondrion, nucleus, plasma membrane, plastid	55.76	55.32
Zm00001d024647_P001	Maize	mitochondrion	55.63	55.05
Os08t0143400-01	Rice	nucleus	54.83	54.26
VIT_03s0017g01000.t01	Wine grape	nucleus	47.42	52.88
VIT_13s0019g04820.t01	Wine grape	nucleus	52.45	38.6
VIT_12s0028g01120.t01	Wine grape	cytosol	20.79	32.04
VIT_04s0043g00220.t01	Wine grape	plastid	18.81	28.98
VIT_11s0016g02180.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	18.01	26.2
VIT_01s0127g00770.t01	Wine grape	cytosol	2.91	24.18
VIT_01s0127g00750.t01	Wine grape	golgi, vacuole	14.97	23.11
VIT_13s0064g00390.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	15.1	22.66
VIT_01s0127g00800.t01	Wine grape	extracellular, plasma membrane, vacuole	14.3	21.82
VIT_17s0053g00880.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	7.15	21.18
VIT_01s0127g00780.t01	Wine grape	golgi, vacuole	13.38	20.0
VIT_18s0001g13650.t01	Wine grape	nucleus	13.11	8.45
VIT_18s0001g13640.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	3.05	4.39

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100262290	wikigene:100262290	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10
InterPro:Amino_oxidase	ProteinID:CCB46381	ProteinID:CCB46381.1	UniProt:F6H2D7	InterPro:FAD/NAD-bd_sf	EMBL:FN595229
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:Homeobox-like_sf	InterPro:IPR007526
InterPro:IPR036188	InterPro:IPR036388	EntrezGene:LOC100262290	wikigene:LOC100262290	PFAM:PF01593	PFAM:PF04433
PFscan:PS50934	PANTHER:PTHR10742	PANTHER:PTHR10742:SF347	SUPFAM:SSF46689	SUPFAM:SSF51905	SUPFAM:SSF54373
InterPro:SWIRM	UniParc:UPI00015C79A6	ArrayExpress:VIT_19s0014g03430	EnsemblPlantsGene:VIT_19s0014g03430	EnsemblPlants:VIT_19s0014g03430.t01	InterPro:WH-like_DNA-bd_sf
RefSeq:XP_002281860	RefSeq:XP_002281860.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr19:+:3579039..3581610

Molecular Weight (calculated)

83085.7 Da

IEP (calculated)

7.426

GRAVY (calculated)

-0.168

Length

755 amino acids

Sequence
(BLAST)

001: MDSLGSGGPG PKRSLRKKAG LKSYDENLMD DLIDKHLGGS MKKKNRTTQD IEKETETEAM IALSVGFPID ALLEEEIQAG VVSELDGKEQ NDYIVVRNHI
101: LARWRDNVHS WLSKGQIKET VSSEYAHLIS SAYDFLLYNG YINFGVSPSC MSQIPEEATE GSVIIVGAGL AGLAAARQLL SFGFKVVVLE GRNRPGGRVY
201: TQKMGQKGNY AAVDLGGSVI TGIHANPLGV LARQLSIPLH KVRDRCPLYK PDGEVIDKEI DSMIEIIFNK LLDKVTQLRQ IMGGFANDIS LGSVLETLRQ
301: LYAVVRSTEE RQLFDWHLAN LEYANAGCLT NLSAAYWDQD DPYEMGGDHC FLAGGNWRLI KALCEGVPIF YGKTVHTIKY GNDGVEVIAG DQVFQADMVL
401: CTVPLGVLKK RAIRFEPELP VRKLAAIDRL GFGLLNKVAM VFPRVFWGED LDTFGRLSNC SHKRGEFFLF YSYHTVSGGP VLVALVAGEA AQAFEYTDPS
501: TLLHRVLNIL RGIYTPKGIN VPNPIQTICT RWGSDPLSYG SYSHVRVRSS GSDYDILAES VAGRLFFAGE ATNRQYPASM HGAFLSGLRE ASCILGATRS
601: HQSNSRKLMQ KNIGPSNDVL IDLFKRPDLA FGKFSFIFNP LTVDPKAMGI MRISVGNSSS ENSSEKEIEN SSQNSPDLPL QLYTMLSREQ AHQVQLIAGE
701: DESRLSFLLK DLGLKLMGPS SMGSIGNSLA ATIASARRGR GRYRVSSKYD FSSMH

Best Arabidopsis Sequence Match ( AT3G13682.1 )
(BLAST)

001: MNSPASDETA PRRNRRKVSR KNYDENAMDE LIEKQLGGKA KKKYRTKQDL EKETETEALI ALSVGFPIDE LLEEEIRAGV VRELGGKEQN DYIVVRNHIV
101: ARWRGNVGIW LLKDQIRETV SSDFEHLISA AYDFLLFNGY INFGVSPLFA PYIPEEGTEG SVIVVGAGLA GLAAARQLLS FGFKVLVLEG RSRPGGRVYT
201: QKMGGKDRFA AVELGGSVIT GLHANPLGVL ARQLSIPLHK VRDNCPLYNS EGVLVDKVAD SNVEFGFNKL LDKVTEVREM MEGAAKKISL GEVLETLRVL
301: YGVAKDSEER KLFDWHLANL EYANAGCLSN LSAAYWDQDD PYEMGGDHCF LAGGNWRLIN ALAEGLPIIY GKSVDTIKYG DGGVEVISGS QIFQADMILC
401: TVPLGVLKKR SIKFEPELPR RKQAAIDRLG FGLLNKVAML FPSVFWGDEL DTFGCLNESS INRGEFFLFY AYHTVSGGPA LVALVAGEAA QRFECTEPSV
501: LLHRVLKKLR GIYGPKGVVV PDPIQTVCTR WGSDPLSYGS YSHVRVGSSG VDYDILAESV SNRLFFAGEA TTRQHPATMH GAYLSGLREA SKILHVANYL
601: RSNLKKPVQR YSGVNINVLE DMFKRPDIAI GKLSFVFNPL TDDPKSFGLV RVCFDNFEED PTNRLQLYTI LSREQANKIK ELDENSNESK LSCLMNTLGL
701: KLMGANSVLD TGGALISVIA NARRGRSRSH VVAGQCNLPL NPLHFN

Arabidopsis Description

LDL2Lysine-specific histone demethylase 1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.