Factsheet for Zm00001d024647_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14528	Sorghum	mitochondrion, nucleus, plasma membrane, plastid	90.17	90.41
TraesCS7B01G206700.1	Wheat	cytosol, nucleus, plasma membrane, plastid	79.55	79.87
HORVU7Hr1G073020.3	Barley	cytosol, mitochondrion, peroxisome	75.75	79.83
TraesCS7A01G306400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	79.29	79.71
TraesCS7D01G303200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	79.03	79.45
Os08t0143400-01	Rice	nucleus	77.06	77.06
GSMUA_Achr5P26260_001	Banana	plastid	54.39	59.97
CDY55139	Canola	endoplasmic reticulum, extracellular	44.82	58.76
AT3G13682.1	Thale cress	cytosol	54.78	56.03
Bra021500.1-P	Field mustard	cytosol	53.34	55.68
VIT_19s0014g03430.t01	Wine grape	cytosol	55.05	55.63
CDY51731	Canola	cytosol	53.34	55.6
CDY55136	Canola	cytosol	53.08	55.4
PGSC0003DMT400049658	Potato	cytosol	54.39	54.68
KRH55370	Soybean	nucleus	52.82	54.24
Solyc07g063500.2.1	Tomato	cytosol, mitochondrion, nucleus	52.69	53.24
Solyc07g063450.1.1	Tomato	cytosol	54.26	45.25
Zm00001d002684_P001	Maize	extracellular	44.56	42.08
Zm00001d018102_P001	Maize	nucleus	46.53	41.81
Zm00001d026334_P001	Maize	peroxisome	19.92	31.54
Zm00001d002266_P003	Maize	peroxisome	19.92	31.47
Zm00001d036513_P001	Maize	cytosol, peroxisome, plastid	19.27	31.14
Zm00001d001883_P008	Maize	cytosol, peroxisome, plastid	19.66	30.61
Zm00001d026586_P003	Maize	peroxisome, plastid	20.18	29.11
Zm00001d028172_P001	Maize	cytosol	12.84	26.49
Zm00001d043681_P001	Maize	mitochondrion	17.43	26.39
Zm00001d024281_P001	Maize	extracellular	16.25	24.8
Zm00001d029714_P001	Maize	extracellular	30.28	12.73

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:103641305	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10	ProteinID:AQK41685.1
InterPro:Amino_oxidase	InterPro:FAD/NAD-bd_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016491	GO:GO:0019538	GO:GO:0051568	GO:GO:0055114	InterPro:Homeobox-like_sf
InterPro:IPR007526	InterPro:IPR036188	InterPro:IPR036388	UniProt:K7TM08	PFAM:PF01593	PFAM:PF04433
PFscan:PS50934	PANTHER:PTHR10742	PANTHER:PTHR10742:SF347	SUPFAM:SSF46689	SUPFAM:SSF51905	SUPFAM:SSF54373
InterPro:SWIRM	UniParc:UPI0002216C4C	InterPro:WH-like_DNA-bd_sf	EnsemblPlantsGene:Zm00001d024647	EnsemblPlants:Zm00001d024647_P001	EnsemblPlants:Zm00001d024647_T001
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:82038496..82042897

Molecular Weight (calculated)

83468.5 Da

IEP (calculated)

6.823

GRAVY (calculated)

-0.170

Length

763 amino acids

Sequence
(BLAST)

001: MSSSPPRRPQ RRAASSRPAS YDESLLDAEL QAYLGDAASR RVRRLRRLSA EERQRETETE ALIALSLGFP IDELLPEERP LLPAHIADAP NDYIVVRNHI
101: LASWRADPGA PLPLARVLET VSATYDRLVA AAHGYLAREG HINFGVSAAF PAAPPPDAAS QGAASVLVVG AGLAGLAAAR QLVRFGLRVL VLEGRARPGG
201: RVYTARLGED KAAVELGGSV ITGIHANPLG VLARQLALPL HKVRDRCPLY YPDGRTVETR LDRSIDLVFN TLLDHATRLR ESLNEAAERI SLGEAIDKLR
301: RLYHVARSDD ERMLLDWHFA NLEFSNAGCL WELSLAHWDQ DDPYEMGGDH CFLAGGNSRL IHALCDGVPV LYEKNVTRIE HGVDGVSVTV EEGQIFQADM
401: VLCTVPLGVL KSGSIVFDPE LPEEKLGAIK RLGFGLLNKV AMVFPSVFWD EDIDTFGCLN KESSKRGEFF LFYSYHTVSG GAVLVALVAG EAALEFEKVD
501: PVVALHRVLG ILKGIYGPKG VTVPDPVQSV CTRWGSDPFC SGSYSHIRVG SSGADYDILS ESVNDRLFFA GEATNRAYPA TMHGALLSGL REASKIYRAS
601: DSLVNYDQKK NSLPKSLKPP DGALLDLFLE PDLAFGRFSF VFSSLTPDDP AAPGLLRVSL DKRFLLQPNY NSELKGDQKD HSHSHASGAF HLYAAVSREQ
701: ADRLRRSSED DRTRLGVLCK DRTVKLMGYD STCDVGSDLI SSILGARKAR KLLQHPKNSK IPR

Best Arabidopsis Sequence Match ( AT3G13682.1 )
(BLAST)

001: MNSPASDETA PRRNRRKVSR KNYDENAMDE LIEKQLGGKA KKKYRTKQDL EKETETEALI ALSVGFPIDE LLEEEIRAGV VRELGGKEQN DYIVVRNHIV
101: ARWRGNVGIW LLKDQIRETV SSDFEHLISA AYDFLLFNGY INFGVSPLFA PYIPEEGTEG SVIVVGAGLA GLAAARQLLS FGFKVLVLEG RSRPGGRVYT
201: QKMGGKDRFA AVELGGSVIT GLHANPLGVL ARQLSIPLHK VRDNCPLYNS EGVLVDKVAD SNVEFGFNKL LDKVTEVREM MEGAAKKISL GEVLETLRVL
301: YGVAKDSEER KLFDWHLANL EYANAGCLSN LSAAYWDQDD PYEMGGDHCF LAGGNWRLIN ALAEGLPIIY GKSVDTIKYG DGGVEVISGS QIFQADMILC
401: TVPLGVLKKR SIKFEPELPR RKQAAIDRLG FGLLNKVAML FPSVFWGDEL DTFGCLNESS INRGEFFLFY AYHTVSGGPA LVALVAGEAA QRFECTEPSV
501: LLHRVLKKLR GIYGPKGVVV PDPIQTVCTR WGSDPLSYGS YSHVRVGSSG VDYDILAESV SNRLFFAGEA TTRQHPATMH GAYLSGLREA SKILHVANYL
601: RSNLKKPVQR YSGVNINVLE DMFKRPDIAI GKLSFVFNPL TDDPKSFGLV RVCFDNFEED PTNRLQLYTI LSREQANKIK ELDENSNESK LSCLMNTLGL
701: KLMGANSVLD TGGALISVIA NARRGRSRSH VVAGQCNLPL NPLHFN

Arabidopsis Description

LDL2Lysine-specific histone demethylase 1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.