CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g03430.t01	Wine grape	cytosol	71.74	70.6
PGSC0003DMT400049658	Potato	cytosol	69.31	67.85
CDY55139	Canola	endoplasmic reticulum, extracellular	52.62	67.18
Solyc07g063500.2.1	Tomato	cytosol, mitochondrion, nucleus	67.97	66.89
CDY55136	Canola	cytosol	65.41	66.48
Bra021500.1-P	Field mustard	cytosol	65.14	66.21
AT3G13682.1	Thale cress	cytosol	66.35	66.09
CDY51731	Canola	cytosol	65.01	65.98
GSMUA_Achr5P26260_001	Banana	plastid	54.78	58.81
Solyc07g063450.1.1	Tomato	cytosol	69.18	56.17
HORVU7Hr1G073020.3	Barley	cytosol, mitochondrion, peroxisome	53.57	54.97
TraesCS7D01G303200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	55.72	54.55
TraesCS7B01G206700.1	Wheat	cytosol, nucleus, plasma membrane, plastid	55.59	54.34
TraesCS7A01G306400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	55.32	54.15
EES14528	Sorghum	mitochondrion, nucleus, plasma membrane, plastid	55.05	53.75
Zm00001d024647_P001	Maize	mitochondrion	54.24	52.82
Os08t0143400-01	Rice	nucleus	54.1	52.69
KRH48463	Soybean	cytosol, peroxisome	25.03	50.96
KRH39215	Soybean	nucleus	50.47	44.7
KRH71619	Soybean	cytosol	51.95	44.06
KRH48462	Soybean	nucleus, plastid	21.0	42.39
KRH45972	Soybean	cytosol, mitochondrion, peroxisome, plastid	20.86	31.63
KRH73583	Soybean	cytosol, peroxisome, plastid	20.73	31.62
KRG99036	Soybean	plasma membrane, vacuole	21.0	31.33
KRH14536	Soybean	cytosol, mitochondrion, peroxisome, plastid	20.32	30.88
KRH20055	Soybean	cytosol	20.32	30.63
KRG98020	Soybean	cytosol	20.19	30.43
KRH72905	Soybean	peroxisome	19.25	28.95
KRH17261	Soybean	cytosol, peroxisome, plasma membrane	19.11	28.74
KRH02713	Soybean	golgi	18.44	25.85
KRH19156	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	18.04	24.91
KRH39911	Soybean	plasma membrane	14.67	23.44
KRH12386	Soybean	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	17.63	22.55
KRH37387	Soybean	golgi	17.9	22.17
KRH32977	Soybean	plasma membrane	14.8	22.0
KRH13982	Soybean	plasma membrane	14.13	20.96
KRH69303	Soybean	vacuole	10.36	20.0
KRH05909	Soybean	nucleus	33.78	13.16
KRH17390	Soybean	nucleus	33.24	13.04

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100809901	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10	EMBL:ACUP02003971
InterPro:Amino_oxidase	InterPro:FAD/NAD-bd_sf	EnsemblPlantsGene:GLYMA_06G250100	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	InterPro:Homeobox-like_sf	UniProt:I1KE11	InterPro:IPR007526	InterPro:IPR036188	InterPro:IPR036388
EnsemblPlants:KRH55370	ProteinID:KRH55370	ProteinID:KRH55370.1	PFAM:PF01593	PFAM:PF04433	PFscan:PS50934
PANTHER:PTHR10742	PANTHER:PTHR10742:SF347	SUPFAM:SSF46689	SUPFAM:SSF51905	SUPFAM:SSF54373	InterPro:SWIRM
UniParc:UPI0002339E7E	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:42299259..42304399

Molecular Weight (calculated)

82243.7 Da

IEP (calculated)

6.659

GRAVY (calculated)

-0.148

Length

743 amino acids

Sequence
(BLAST)

001: METPSSNGSV SKRSLRRKVN LRNYDEDLMD EMFEKQLGGG LKKRSRTKED LEKETETEAM IAMSLGFPID ALLEEEIKAG VVRELGGKEQ NDYIVIRNHI
101: LALWRRGNVR LWLSKGMVRE TVSNEYDHLI NSAYDYLLYN GYINFGVSPA FTSQLPESTE GTAVVIGAGL AGLAAARQLL SFGYKVVVLE GRSRPGGRVY
201: TQKVGREGKF ASIDLGGSII TGIHANPLGV LARQLSIPLH KVRDDCPLYK PNGAPVDKET DASVEFVFNK LLDKVMELRQ IMGGFASDTS LGSVLEMLRR
301: LYNVTRSTDE KQLLDWHLAN LEYANAGCLS NLSAAYWDQD DPYEMSGDHC FLAGGNMGLI KALCEGVPVF YGKTVNTIRY GNEGVEVIAG EHVFQADIAL
401: CTVPLGVLKK KAISFEPELP ARKLEAIERM GFGLLNKVAM VFPHVFWGED RDTFGCLNEH SHQRGEFFLF YCYHTVSGGP ALIALVAGEA AQAFESTDAS
501: ILLHRVLTVL KGIFHPKGII VPDPIQSICT RWGSDPLSYG SYSHVSVNSS GADYDILAEN VGNRLFFAGE ATSRQYPATM HGAFLSGLRE ASHIYRSARI
601: QNNPRKCMPK NIVSNDILGD LFKWPDLEFG KFAFIFYPSP ENLQSTGLLQ VTIGDAEEIY EELFSSYPNA AKWPLQLYTI ISREQAQQLQ KVEGGNESLL
701: SFLVKTLGLK LMGPNALLTA GNTLIASIAH SRKGRWRNRV ITC

Best Arabidopsis Sequence Match ( AT3G13682.1 )
(BLAST)

001: MNSPASDETA PRRNRRKVSR KNYDENAMDE LIEKQLGGKA KKKYRTKQDL EKETETEALI ALSVGFPIDE LLEEEIRAGV VRELGGKEQN DYIVVRNHIV
101: ARWRGNVGIW LLKDQIRETV SSDFEHLISA AYDFLLFNGY INFGVSPLFA PYIPEEGTEG SVIVVGAGLA GLAAARQLLS FGFKVLVLEG RSRPGGRVYT
201: QKMGGKDRFA AVELGGSVIT GLHANPLGVL ARQLSIPLHK VRDNCPLYNS EGVLVDKVAD SNVEFGFNKL LDKVTEVREM MEGAAKKISL GEVLETLRVL
301: YGVAKDSEER KLFDWHLANL EYANAGCLSN LSAAYWDQDD PYEMGGDHCF LAGGNWRLIN ALAEGLPIIY GKSVDTIKYG DGGVEVISGS QIFQADMILC
401: TVPLGVLKKR SIKFEPELPR RKQAAIDRLG FGLLNKVAML FPSVFWGDEL DTFGCLNESS INRGEFFLFY AYHTVSGGPA LVALVAGEAA QRFECTEPSV
501: LLHRVLKKLR GIYGPKGVVV PDPIQTVCTR WGSDPLSYGS YSHVRVGSSG VDYDILAESV SNRLFFAGEA TTRQHPATMH GAYLSGLREA SKILHVANYL
601: RSNLKKPVQR YSGVNINVLE DMFKRPDIAI GKLSFVFNPL TDDPKSFGLV RVCFDNFEED PTNRLQLYTI LSREQANKIK ELDENSNESK LSCLMNTLGL
701: KLMGANSVLD TGGALISVIA NARRGRSRSH VVAGQCNLPL NPLHFN

Arabidopsis Description

LDL2Lysine-specific histone demethylase 1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.