Factsheet for TraesCS7A01G306400.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
plastid 2
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G206700.1	Wheat	cytosol, nucleus, plasma membrane, plastid	99.47	99.34
TraesCS7D01G303200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	98.95	98.95
HORVU7Hr1G073020.3	Barley	cytosol, mitochondrion, peroxisome	92.09	96.55
Os08t0143400-01	Rice	nucleus	81.03	80.6
Zm00001d024647_P001	Maize	mitochondrion	79.71	79.29
EES14528	Sorghum	mitochondrion, nucleus, plasma membrane, plastid	78.52	78.32
GSMUA_Achr5P26260_001	Banana	plastid	55.86	61.27
CDY55139	Canola	endoplasmic reticulum, extracellular	45.85	59.79
VIT_19s0014g03430.t01	Wine grape	cytosol	56.13	56.42
Bra021500.1-P	Field mustard	cytosol	54.15	56.22
AT3G13682.1	Thale cress	cytosol	55.2	56.17
CDY51731	Canola	cytosol	54.15	56.15
CDY55136	Canola	cytosol	54.02	56.09
KRH55370	Soybean	nucleus	54.15	55.32
PGSC0003DMT400049658	Potato	cytosol	53.89	53.89
Solyc07g063500.2.1	Tomato	cytosol, mitochondrion, nucleus	52.44	52.72
Solyc07g063450.1.1	Tomato	cytosol	53.49	44.37
TraesCS6A01G318300.1	Wheat	nucleus	46.38	42.82
TraesCS2A01G407400.1	Wheat	cytosol	45.59	41.29
TraesCS2A01G548100.1	Wheat	peroxisome	20.55	32.03
TraesCS2A01G548200.1	Wheat	plastid	20.42	31.63
TraesCS2A01G467300.1	Wheat	peroxisome	20.16	31.61
TraesCS3A01G250700.1	Wheat	mitochondrion	17.52	26.08
TraesCS7A01G378800.1	Wheat	cytosol	15.02	24.95
TraesCS4A01G039600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	14.62	23.72
TraesCS5A01G549600.1	Wheat	plastid	15.41	23.64
TraesCS7A01G539200.1	Wheat	plasma membrane, vacuole	14.76	22.05
TraesCS6A01G405500.2	Wheat	nucleus	30.57	12.53

Protein Annotations

Gene3D:1.10.10.10	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10	InterPro:Amino_oxidase	InterPro:FAD/NAD-bd_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016491
GO:GO:0019538	GO:GO:0051568	GO:GO:0055114	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR036188
InterPro:IPR036388	PFAM:PF01593	PFAM:PF04433	PFscan:PS50934	PANTHER:PTHR10742	PANTHER:PTHR10742:SF347
SUPFAM:SSF46689	SUPFAM:SSF51905	SUPFAM:SSF54373	InterPro:SWIRM	EnsemblPlantsGene:TraesCS7A01G306400	EnsemblPlants:TraesCS7A01G306400.1
InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7A:+:432682123..432688104

Molecular Weight (calculated)

82696.5 Da

IEP (calculated)

6.245

GRAVY (calculated)

-0.179

Length

759 amino acids

Sequence
(BLAST)

001: MSPSPPPPSG RPRRAASARP GSYDESLVDT ELQAYLGNSP SRRIRRLRRL SPEERQRETE TEALISLSLG FPIDALLPAE EAILADADAA APNDYIVVRN
101: HILASWRADP RVPLPRARVL ETVASSYDHL VAAAHGFLTR EGHVNFGVSA AFPASSPADA LQAPAASVLV IGAGLAGLAA ARQLLRFGLR VLVLEGRARP
201: GGRVYTSRLG GGQAAVELGG SVITGIHANP LGVLARQLGI PLHKVRDRCP LYHTDGRTVG TRLDRSIDLV FNTLLDHATR LREALKEAAE GISLGEGIER
301: LRRLYNVAKS EEEREVLDWH LANLEFSNAG CLSELSLAHW DQDDQFEMGG DHCFLAGGNS RLVHALCDGV PVLYEKTVKR IEHGVDGVSI TVEGGQVFQA
401: DMALCTVPLG VLKSGSIVFD PELPENKLGA IQRLGFGLLN KVAMVFPSVF WDEEIDTFGC LNKESSKRGE FFLFYSYHTV SGGAVLVALV AGEAALEFEK
501: IDPVVTLHRV LGILRGIYGP KGVTVPDPIQ SACTRWGSDP LCCGSYSHIR VGSSGTDYDI LAESVSEDRL FFAGEATNRA YPATMHGALL SGLREASRIL
601: RASQSRVDSD HKKYALQKSL RPPDGILEDL FTEPDLEFSR FSFVFSSMTP DDPQSMGLLR ITLENPHLEG DQKDQEPAAE KEAHQKAFHL YAAISREQAN
701: QLQLAGDDDR GRLELLCKDL SVKLMGYDST CDTGSSLILS IQSAQKARKR LQRPKDFKF

Best Arabidopsis Sequence Match ( AT3G13682.1 )
(BLAST)

001: MNSPASDETA PRRNRRKVSR KNYDENAMDE LIEKQLGGKA KKKYRTKQDL EKETETEALI ALSVGFPIDE LLEEEIRAGV VRELGGKEQN DYIVVRNHIV
101: ARWRGNVGIW LLKDQIRETV SSDFEHLISA AYDFLLFNGY INFGVSPLFA PYIPEEGTEG SVIVVGAGLA GLAAARQLLS FGFKVLVLEG RSRPGGRVYT
201: QKMGGKDRFA AVELGGSVIT GLHANPLGVL ARQLSIPLHK VRDNCPLYNS EGVLVDKVAD SNVEFGFNKL LDKVTEVREM MEGAAKKISL GEVLETLRVL
301: YGVAKDSEER KLFDWHLANL EYANAGCLSN LSAAYWDQDD PYEMGGDHCF LAGGNWRLIN ALAEGLPIIY GKSVDTIKYG DGGVEVISGS QIFQADMILC
401: TVPLGVLKKR SIKFEPELPR RKQAAIDRLG FGLLNKVAML FPSVFWGDEL DTFGCLNESS INRGEFFLFY AYHTVSGGPA LVALVAGEAA QRFECTEPSV
501: LLHRVLKKLR GIYGPKGVVV PDPIQTVCTR WGSDPLSYGS YSHVRVGSSG VDYDILAESV SNRLFFAGEA TTRQHPATMH GAYLSGLREA SKILHVANYL
601: RSNLKKPVQR YSGVNINVLE DMFKRPDIAI GKLSFVFNPL TDDPKSFGLV RVCFDNFEED PTNRLQLYTI LSREQANKIK ELDENSNESK LSCLMNTLGL
701: KLMGANSVLD TGGALISVIA NARRGRSRSH VVAGQCNLPL NPLHFN

Arabidopsis Description

LDL2Lysine-specific histone demethylase 1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.