Factsheet for TraesCS5A01G549600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid, secretory
iPSORT:	secretory
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G385300.1	Wheat	endoplasmic reticulum	86.67	89.19
Zm00001d024281_P001	Maize	extracellular	83.03	82.2
TraesCS4A01G039600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	74.95	79.27
Os09t0368500-01	Rice	golgi	75.35	78.69
Os09t0368200-00	Rice	golgi, vacuole	77.98	77.82
OQU80059	Sorghum	peroxisome	81.82	72.32
TraesCS7A01G378800.1	Wheat	cytosol	63.03	68.27
TraesCS7A01G539200.1	Wheat	plasma membrane, vacuole	69.49	67.72
Os03t0193400-00	Rice	nucleus, peroxisome	27.47	67.33
GSMUA_Achr6P24910_001	Banana	endoplasmic reticulum	36.97	67.28
VIT_01s0127g00800.t01	Wine grape	extracellular, plasma membrane, vacuole	60.81	60.81
VIT_01s0127g00770.t01	Wine grape	cytosol	10.91	59.34
VIT_01s0127g00780.t01	Wine grape	golgi, vacuole	57.98	56.83
VIT_01s0127g00750.t01	Wine grape	golgi, vacuole	53.33	53.99
KRH39911	Soybean	plasma membrane	41.82	44.52
KRH13982	Soybean	plasma membrane	43.23	42.71
KRH32977	Soybean	plasma membrane	42.63	42.2
CDX70516	Canola	extracellular	40.0	42.04
AT5G13700.1	Thale cress	extracellular	40.0	41.95
Bra006210.1-P	Field mustard	extracellular	39.6	41.61
CDX78534	Canola	extracellular	40.0	41.25
Solyc01g087590.2.1	Tomato	vacuole	41.01	40.85
PGSC0003DMT400017667	Potato	vacuole	40.61	40.61
KRH69303	Soybean	vacuole	28.89	37.14
TraesCS2A01G548200.1	Wheat	plastid	24.04	24.29
TraesCS2A01G467300.1	Wheat	peroxisome	23.23	23.76
TraesCS2A01G548100.1	Wheat	peroxisome	23.23	23.61
TraesCS3A01G250700.1	Wheat	mitochondrion	21.41	20.78
TraesCS7A01G306400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	23.64	15.41
TraesCS6A01G318300.1	Wheat	nucleus	25.25	15.21
TraesCS2A01G407400.1	Wheat	cytosol	24.04	14.2
TraesCS6A01G405500.2	Wheat	nucleus	26.67	7.13

Protein Annotations

EnsemblPlants:TraesCS5A01G549600.1	EnsemblPlantsGene:TraesCS5A01G549600	Gene3D:3.50.50.60	Gene3D:3.90.660.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:Amino_oxidase	InterPro:FAD/NAD-bd_sf
InterPro:Flavin_amine_oxidase	InterPro:IPR036188	PANTHER:PTHR10742	PANTHER:PTHR10742:SF313	PFAM:PF01593	PRINTS:PR00757
SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF51905	SUPFAM:SSF54373	MapMan:8.5.2.1	:

Description

No Description!

Coordinates

chr5A:+:703381920..703385367

Molecular Weight (calculated)

55512.8 Da

IEP (calculated)

5.772

GRAVY (calculated)

-0.315

Length

495 amino acids

Sequence
(BLAST)

001: MTPTGATAAL VLAVLTLAHH ASLAAAGGPR VIIVGAGMSG ISAGKRLSEA GITDLVILEA TDHVGGRMHK RDFGGISVEM GANWVEGVNG GKMNPIWPIV
101: NSTLKLTNFR SDFDDLASNV YREKGGVYKK AYVQKRIDLS DKVQEGGEEH SAKLHLSGQD DMSILAMQRL NDHLPNGPSA AVDMILDYFK YDYEFAEPPR
201: VTSLQNTIPL ATFNDFGDDV YFVADQRGYE AVVYHLAGQY LKADKSGGII DPRLQLNKVV REISYSGSGV RVETEDNKVY KADYVMVSTS LGVLQSDLIK
301: FEPQLPTWKV LSIYQFDMAV YTKIFVKFPK KFWPEGKGRE FFLYASSRRG YYGVWQEFEA QYPDANVLLV TVTNEESRRI EQQSDNQTKA EIMEVLRSMF
401: PDEDVPDATD ILVPRWWSDR FYMGTFSNWP IGVNRYEYDQ LRAPVGRVYF TGEHTNEHYN GHVHGAYLSG IDSADILINC AQKSMCKYHV QGKYD

Best Arabidopsis Sequence Match ( AT5G13700.1 )
(BLAST)

001: MSTASVIIIG AGISGISAAK VLVENGVEDV LILEATDRIG GRIHKQNFGD VPVELGAGWI AGVGGKESNP VWELASRFNL RTCFSDYTNA RFNIYDRSGK
101: IFPTGIASDS YKKAVDSAIL KLKSLEAQCS GQVAEEAPSS PKTPIELAID FILHDFEMAE VEPISTYVDF GEREFLVADE RGYECLLYKM AEEFLVTSHG
201: NILDYRLKLN QVVREVQQSR NGVVVKTEDG SVYEANYVIV SASIGVLQSD LLSFQPLLPR WKTEAIQKCD VMVYTKIFLK FPQCFWPCGP GQEFFIYAHE
301: QRGYFTFWQH MENAYPGSNI LVVTLTNEQS KRVEAQSDQE TMKEAMSVLR DMFGATIPYA TDILVPRWWN NRFQRGSYSN YPMISDNQLL QNIKAPVGRI
401: FFTGEHTSEK FSGYVHGGYL AGIDTSKSLL EEMKQSLLLQ PLLAFTESLT LTHQKPNNSQ IYTNVKFISG TS

Arabidopsis Description

PAO1Polyamine oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNA2]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.