Factsheet for TraesCS6A01G318300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G348300.1	Wheat	nucleus	98.54	98.18
TraesCS6D01G297500.1	Wheat	plastid	98.05	91.9
HORVU6Hr1G078160.1	Barley	plastid	96.47	90.84
Os02t0755200-01	Rice	nucleus	86.37	83.63
OQU85392	Sorghum	nucleus	85.16	82.35
Zm00001d018102_P001	Maize	nucleus	84.79	82.1
GSMUA_Achr3P06520_001	Banana	extracellular, nucleus, peroxisome	26.03	69.48
KRH48463	Soybean	cytosol, peroxisome	27.62	62.19
GSMUA_Achr9P14930_001	Banana	nucleus	52.92	62.14
VIT_03s0017g01000.t01	Wine grape	nucleus	50.85	61.74
Bra027014.1-P	Field mustard	cytosol	47.69	56.16
CDY46926	Canola	cytosol	47.69	56.16
CDY31848	Canola	nucleus	47.45	55.63
KRH39215	Soybean	nucleus	55.35	54.23
PGSC0003DMT400095293	Potato	nucleus	53.53	54.19
AT1G62830.1	Thale cress	nucleus	54.14	52.73
KRH48462	Soybean	nucleus, plastid	22.87	51.09
TraesCS7A01G306400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	42.82	46.38
TraesCS2A01G407400.1	Wheat	cytosol	45.99	45.11
TraesCS2A01G548200.1	Wheat	plastid	18.61	31.22
TraesCS2A01G548100.1	Wheat	peroxisome	18.37	31.01
TraesCS2A01G467300.1	Wheat	peroxisome	17.88	30.37
TraesCS3A01G250700.1	Wheat	mitochondrion	16.55	26.67
TraesCS5A01G549600.1	Wheat	plastid	15.21	25.25
TraesCS4A01G039600.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	14.11	24.79
TraesCS7A01G539200.1	Wheat	plasma membrane, vacuole	14.72	23.82
TraesCS7A01G378800.1	Wheat	cytosol	13.02	23.41
TraesCS6A01G405500.2	Wheat	nucleus	29.93	13.28

Protein Annotations

Gene3D:1.10.10.10	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10	InterPro:Amino_oxidase	ncoils:Coil
InterPro:FAD/NAD-bd_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016491
GO:GO:0016575	GO:GO:0019538	GO:GO:0048364	GO:GO:0051568	GO:GO:0055114	InterPro:Homeobox-like_sf
InterPro:IPR007526	InterPro:IPR036188	InterPro:IPR036388	PFAM:PF01593	PFAM:PF04433	PFscan:PS50934
PANTHER:PTHR10742	PANTHER:PTHR10742:SF353	SUPFAM:SSF46689	SUPFAM:SSF51905	SUPFAM:SSF54373	InterPro:SWIRM
EnsemblPlantsGene:TraesCS6A01G318300	EnsemblPlants:TraesCS6A01G318300.1	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr6A:+:554459709..554462177

Molecular Weight (calculated)

87902.7 Da

IEP (calculated)

5.281

GRAVY (calculated)

-0.099

Length

822 amino acids

Sequence
(BLAST)

001: MEEGNGAQPP PLPPPEAAGH LALVPMEQDE DQAAAAEPME DGAAGGDAAE PMEEDAPTSS PTPSAPSTTA AVDDSTVARK RRRRKKQFPG MIPTAGVRVL
101: RASSSSGATA AHLAGIPRRR GRPPTNSSLR LARELDSEAT IALAAGFPAD TLSEDEVAAA VIPLIGGADQ ANYLVVRNHI LALWRSNPLS PVAANAALAS
201: IRAEHAPLVA AAHSFLSDHA YINFGLAPSI VSLPPIPPPS HPPPSVLIVG AGFAGLAAAR HLMSLGFKVA IVEGRLRPGG RVFTKTMRSS AADYPDIAAS
301: ADLGGSVLTG INGNPLGVIA RQLGFPLHKV RDKCPLYLPD GRPVDPDMDG RVEAAFNQLL DKVCQLRQVI ADNVPHGVDV SLGMALEAFR AAHGVAAEPE
401: ERMLLDWHLA NLEYANAAPL ADLSMAFWDQ DDPYEMGGDH CFIPGGNSQF VRALADGVPI FYGQNVRRIQ YGCDGVLVYT DKQTFRGDMA LCTVPLGVLK
501: KGDIDFVPEL PVQKQEAIQR LGFGLLNKVV MLFPFDFWDG RIDTFGHLTE DSSQRGEFFL FYSYSSVSGG PLLVALVAGE SAISFEKKSP MENVERVLDT
601: LKKIFSPMGI EVPNPLQAIC TRWGTDRFSY GSYSHVAIGS SGDDYDILAE SVGDRIFFAG EATNRRYPAT MHGALLSGYR EAANIVRAAR KRAKKVDLSE
701: KIVVSYEAKD IVQDDNIDLD DLFRTPDVAF GGFSVLHDPS TSEPDSASLL RVGIGARKLG SGSLFLYGLI MRKNVTELAA MEGDEQRLST LYRDFGTKLV
801: GLDGLGDAGE SLISRIKASS KK

Best Arabidopsis Sequence Match ( AT1G62830.1 )
(BLAST)

001: MSTETKETRP ETKPEDLGTH TTVDVPGEEP LGELIADDVN EVVSDASATE TDFSLSPSQS EQNIEEDGQN SLDDQSPLTE LQPLPLPPPL PVEARISESL
101: GEEESSDLVT EQQSQNPNAA EPGPRARKRR RRKRFFTEIN ANPAFSRNRR TSVGKEVDSE ALIAMSVGFP VYSLTEEEIE ANVVSIIGGK DQANYIVVRN
201: HIIALWRSNV SNWLTRDHAL ESIRAEHKTL VDTAYNFLLE HGYINFGLAP VIKEAKLRSF DGVEPPNVVV VGAGLAGLVA ARQLLSMGFR VLVLEGRDRP
301: GGRVKTRKMK GGDGVEAMAD VGGSVLTGIN GNPLGVLARQ LGLPLHKVRD ICPLYLPNGE LADASVDSKI EASFNKLLDR VCKLRQSMIE ENKSVDVPLG
401: EALETFRLVY GVAEDQQERM LLDWHLANLE YANATLLGNL SMAYWDQDDP YEMGGDHCFI PGGNEIFVHA LAENLPIFYG STVESIRYGS NGVLVYTGNK
501: EFHCDMALCT VPLGVLKKGS IEFYPELPHK KKEAIQRLGF GLLNKVAMLF PCNFWGEEID TFGRLTEDPS TRGEFFLFYS YSSVSGGPLL VALVAGDAAE
601: RFETLSPTDS VKRVLQILRG IYHPKGIVVP DPVQALCSRW GQDKFSYGSY SYVAVGSSGD DYDILAESVG DGRVFFAGEA TNRQYPATMH GAFLSGMREA
701: ANILRVARRR ASSSALNPNQ ICIDKEEEVD EEEDRCLDQL FETPDLTFGN FSVLFTPNSD EPESMSLLRV RIQMEKPESG LWLYGLVTRK QAIELGEMDG
801: DELRNEYLRE KLGLVPVERK SLSQEGESMI SSLKAARLNR QIFD

Arabidopsis Description

LDL1Lysine-specific histone demethylase 1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.