Factsheet for TraesCS6D01G297500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G348300.1	Wheat	nucleus	92.36	98.18
TraesCS6A01G318300.1	Wheat	nucleus	91.9	98.05
HORVU6Hr1G078160.1	Barley	plastid	92.7	93.13
Os02t0755200-01	Rice	nucleus	81.07	83.75
OQU85392	Sorghum	nucleus	79.59	82.12
Zm00001d018102_P001	Maize	nucleus	79.25	81.86
GSMUA_Achr3P06520_001	Banana	extracellular, nucleus, peroxisome	24.29	69.16
KRH48463	Soybean	cytosol, peroxisome	25.88	62.19
GSMUA_Achr9P14930_001	Banana	nucleus	49.49	62.0
VIT_03s0017g01000.t01	Wine grape	nucleus	47.66	61.74
Bra027014.1-P	Field mustard	cytosol	44.81	56.3
CDY46926	Canola	cytosol	44.81	56.3
CDY31848	Canola	nucleus	44.58	55.78
KRH39215	Soybean	nucleus	52.34	54.71
PGSC0003DMT400095293	Potato	nucleus	50.29	54.31
AT1G62830.1	Thale cress	nucleus	50.86	52.84
KRH48462	Soybean	nucleus, plastid	21.44	51.09
TraesCS7D01G303200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	40.36	46.64
TraesCS2D01G404400.1	Wheat	plastid	43.79	45.88
TraesCS2D01G549200.1	Wheat	peroxisome, plastid	17.33	30.89
TraesCS2D01G467300.1	Wheat	peroxisome, plastid	16.65	30.17
TraesCS2D01G549300.1	Wheat	mitochondrion, plastid	17.67	28.7
TraesCS3D01G251100.1	Wheat	golgi	15.17	27.09
TraesCS4D01G265800.1	Wheat	unclear	14.14	25.15
TraesCS7D01G375700.1	Wheat	extracellular	14.14	24.65
TraesCS7D01G524900.1	Wheat	plasma membrane	13.8	24.3
TraesCS6D01G389200.1	Wheat	nucleus	28.05	13.28

Protein Annotations

Gene3D:1.10.10.10	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10	InterPro:Amino_oxidase	InterPro:FAD/NAD-bd_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016491	GO:GO:0016575
GO:GO:0019538	GO:GO:0048364	GO:GO:0051568	GO:GO:0055114	InterPro:Homeobox-like_sf	InterPro:IPR007526
InterPro:IPR036188	InterPro:IPR036388	PFAM:PF01593	PFAM:PF04433	PFscan:PS50934	PANTHER:PTHR10742
PANTHER:PTHR10742:SF353	SUPFAM:SSF46689	SUPFAM:SSF51905	SUPFAM:SSF54373	InterPro:SWIRM	EnsemblPlantsGene:TraesCS6D01G297500
EnsemblPlants:TraesCS6D01G297500.1	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6D:+:408651345..408653978

Molecular Weight (calculated)

93709.5 Da

IEP (calculated)

5.528

GRAVY (calculated)

-0.148

Length

877 amino acids

Sequence
(BLAST)

001: MHVLRKHIPQ GQTPLPSRPD SPFAPHSSGP KPTPEPSQFP NLVAEGSSPH PSPETPMEEG NGAQPPPLPP PDAPEAEGHL ALVPMDQDAA AEPMEDGAAG
101: GDAAEPMEED APTSSPTPSA PSATAAVDDS TVARKRRRRK KQFPGMIPTA GVRVLRASSS SGATAAHLAG IPRRRGRPPT NSSLRLAREL DSEATIALAA
201: GFPADTLSED EVAAAVIPLI GGADQANYLV VRNHILALWR SNPLSPVAAN AALASIRAEH APLVAAAHSF LSDHAYINFG LAPSIVSLPP IPPPSHPPPS
301: VLIVGAGFAG LAAARHLMSL GFKVAIVEGR LRPGGRVFTK TMRSSAADYP DIAASADLGG SVLTGINGNP LGVIARQLGF PLHKVRDKCP LYLPDGRPVD
401: PDMDGRVEAA FNQLLDKVCQ LRQVIADSVP HGVDVSLGMA LEAFRAAHGV AAEPEERMLL DWHLANLEYA NAAPLADLSM AFWDQDDPYE MGGDHCFIPG
501: GNSQFVRALA DGVPIFYGQN VRRIQYGCDG VLVYTDKQTF RGDMALCTVP LGVLKKGDID FVPELPVQKR EAIQRLGFGL LNKVVMLFPF DFWDGRIDTF
601: GHLTEDSSQR GEFFLFYSYS SVSGGPLLVA LVAGESAISF EKKSPMENVE RVLDTLKNIF SPMGIEVPNP LQAICTRWGT DKFSYGSYSH VAIGSSGDDY
701: DILAESVGDR IFFAGEATNR RYPATMHGAL LSGYREAANI VRAARKRAKK VDLSEKTVVS YEVKDIVKDD NIDLDDLFRT PDVAFGGFSV LHDPSISEPD
801: SASLLRVGIG ARKLGSGSLF LYGLIMRENV TELAAMEGDE QRLSTLYRDF GTKLVGLDGL GDAGESLISR IKASSKK

Best Arabidopsis Sequence Match ( AT1G62830.1 )
(BLAST)

001: MSTETKETRP ETKPEDLGTH TTVDVPGEEP LGELIADDVN EVVSDASATE TDFSLSPSQS EQNIEEDGQN SLDDQSPLTE LQPLPLPPPL PVEARISESL
101: GEEESSDLVT EQQSQNPNAA EPGPRARKRR RRKRFFTEIN ANPAFSRNRR TSVGKEVDSE ALIAMSVGFP VYSLTEEEIE ANVVSIIGGK DQANYIVVRN
201: HIIALWRSNV SNWLTRDHAL ESIRAEHKTL VDTAYNFLLE HGYINFGLAP VIKEAKLRSF DGVEPPNVVV VGAGLAGLVA ARQLLSMGFR VLVLEGRDRP
301: GGRVKTRKMK GGDGVEAMAD VGGSVLTGIN GNPLGVLARQ LGLPLHKVRD ICPLYLPNGE LADASVDSKI EASFNKLLDR VCKLRQSMIE ENKSVDVPLG
401: EALETFRLVY GVAEDQQERM LLDWHLANLE YANATLLGNL SMAYWDQDDP YEMGGDHCFI PGGNEIFVHA LAENLPIFYG STVESIRYGS NGVLVYTGNK
501: EFHCDMALCT VPLGVLKKGS IEFYPELPHK KKEAIQRLGF GLLNKVAMLF PCNFWGEEID TFGRLTEDPS TRGEFFLFYS YSSVSGGPLL VALVAGDAAE
601: RFETLSPTDS VKRVLQILRG IYHPKGIVVP DPVQALCSRW GQDKFSYGSY SYVAVGSSGD DYDILAESVG DGRVFFAGEA TNRQYPATMH GAFLSGMREA
701: ANILRVARRR ASSSALNPNQ ICIDKEEEVD EEEDRCLDQL FETPDLTFGN FSVLFTPNSD EPESMSLLRV RIQMEKPESG LWLYGLVTRK QAIELGEMDG
801: DELRNEYLRE KLGLVPVERK SLSQEGESMI SSLKAARLNR QIFD

Arabidopsis Description

LDL1Lysine-specific histone demethylase 1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.