Factsheet for GSMUA_Achr3P06520_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, nucleus

Predictor Summary:

nucleus 2
peroxisome 1
plastid 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus, peroxisome
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48463	Soybean	cytosol, peroxisome	63.96	53.97
GSMUA_Achr9P14930_001	Banana	nucleus	60.39	26.57
TraesCS6B01G348300.1	Wheat	nucleus	69.81	26.06
TraesCS6A01G318300.1	Wheat	nucleus	69.48	26.03
Os02t0755200-01	Rice	nucleus	69.81	25.32
Zm00001d018102_P001	Maize	nucleus	67.86	24.62
OQU85392	Sorghum	nucleus	67.86	24.59
TraesCS6D01G297500.1	Wheat	plastid	69.16	24.29
HORVU6Hr1G078160.1	Barley	plastid	68.83	24.28
KRH39215	Soybean	nucleus	64.61	23.72
GSMUA_Achr4P25280_001	Banana	plastid	57.47	23.08
AT1G62830.1	Thale cress	nucleus	62.34	22.75
PGSC0003DMT400095293	Potato	nucleus	59.74	22.66
VIT_03s0017g01000.t01	Wine grape	nucleus	46.75	21.27
Bra027014.1-P	Field mustard	cytosol	47.4	20.92
CDY46926	Canola	cytosol	47.4	20.92
CDY31848	Canola	nucleus	47.4	20.83
GSMUA_Achr6P24880_001	Banana	cytosol	18.83	20.57
GSMUA_Achr5P26260_001	Banana	plastid	44.16	19.65
GSMUA_Achr6P24910_001	Banana	endoplasmic reticulum	17.21	19.49
GSMUA_Achr5P00660_001	Banana	peroxisome	23.05	14.64
GSMUA_Achr3P32350_001	Banana	mitochondrion	22.73	13.83
GSMUA_Achr11P...	Banana	mitochondrion	22.73	13.54
GSMUA_Achr9P21250_001	Banana	plastid	21.1	13.35
GSMUA_AchrUn_...	Banana	plastid	21.1	13.05
GSMUA_Achr4P15860_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	15.26	11.41
GSMUA_Achr5P08640_001	Banana	cytosol, nucleus, peroxisome	16.23	11.06
GSMUA_Achr2P09900_001	Banana	cytosol	36.04	7.84
GSMUA_Achr6P24900_001	Banana	vacuole	2.6	2.63
GSMUA_Achr6P24870_001	Banana	vacuole	0.0	0.0
KRH48462	Soybean	nucleus, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr3P06520_001	EnsemblPlants:GSMUA_Achr3T06520_001	EnsemblPlantsGene:GSMUA_Achr3G06520_001	Gene3D:3.50.50.60	Gene3D:3.90.660.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:Amino_oxidase
InterPro:FAD/NAD-bd_sf	InterPro:IPR036188	PANTHER:PTHR10742	PANTHER:PTHR10742:SF353	PFAM:PF01593	SEG:seg
SUPFAM:SSF51905	SUPFAM:SSF54373	UniParc:UPI00029578C5	UniProt:M0SCB9	MapMan:35.1	:

Description

Lysine-specific histone demethylase 1 homolog 1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G06520_001]

Coordinates

chr3:-:4409018..4410010

Molecular Weight (calculated)

33424.1 Da

IEP (calculated)

7.284

GRAVY (calculated)

-0.010

Length

308 amino acids

Sequence
(BLAST)

001: MALCTVSLGV LKKGCIEFVP ELPQQKQEAI KRLGFGLLNK DPSDRGEFFL FYSYSSVSGG PLLVALVAGE AAIKFENTSP IKHVERVLGV LRGIFAPKGI
101: EVPEPLQVIC TRWGSDKFTY GSYSYVAVGS SGDDYDILAE SVGDGRVFFA GEATNRRYPA TMHGALLSGF REAANIARAS RRRSTIPVMD KVDVMEDPLN
201: LDYLFQTPDF SFGSFSVLYD PYSSGSDSTS LVQVGIGDKN SGSASLFLYC LIPKKIVMDL AEIADDDNRL SMLYRSYGTK LVGRNGLGSA GESLVARIKV
301: ARTANLKT

Best Arabidopsis Sequence Match ( AT1G62830.1 )
(BLAST)

001: MSTETKETRP ETKPEDLGTH TTVDVPGEEP LGELIADDVN EVVSDASATE TDFSLSPSQS EQNIEEDGQN SLDDQSPLTE LQPLPLPPPL PVEARISESL
101: GEEESSDLVT EQQSQNPNAA EPGPRARKRR RRKRFFTEIN ANPAFSRNRR TSVGKEVDSE ALIAMSVGFP VYSLTEEEIE ANVVSIIGGK DQANYIVVRN
201: HIIALWRSNV SNWLTRDHAL ESIRAEHKTL VDTAYNFLLE HGYINFGLAP VIKEAKLRSF DGVEPPNVVV VGAGLAGLVA ARQLLSMGFR VLVLEGRDRP
301: GGRVKTRKMK GGDGVEAMAD VGGSVLTGIN GNPLGVLARQ LGLPLHKVRD ICPLYLPNGE LADASVDSKI EASFNKLLDR VCKLRQSMIE ENKSVDVPLG
401: EALETFRLVY GVAEDQQERM LLDWHLANLE YANATLLGNL SMAYWDQDDP YEMGGDHCFI PGGNEIFVHA LAENLPIFYG STVESIRYGS NGVLVYTGNK
501: EFHCDMALCT VPLGVLKKGS IEFYPELPHK KKEAIQRLGF GLLNKVAMLF PCNFWGEEID TFGRLTEDPS TRGEFFLFYS YSSVSGGPLL VALVAGDAAE
601: RFETLSPTDS VKRVLQILRG IYHPKGIVVP DPVQALCSRW GQDKFSYGSY SYVAVGSSGD DYDILAESVG DGRVFFAGEA TNRQYPATMH GAFLSGMREA
701: ANILRVARRR ASSSALNPNQ ICIDKEEEVD EEEDRCLDQL FETPDLTFGN FSVLFTPNSD EPESMSLLRV RIQMEKPESG LWLYGLVTRK QAIELGEMDG
801: DELRNEYLRE KLGLVPVERK SLSQEGESMI SSLKAARLNR QIFD

Arabidopsis Description

LDL1Lysine-specific histone demethylase 1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.