Factsheet for PGSC0003DMT400095293

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0017g01000.t01	Wine grape	nucleus	62.68	75.18
KRH48463	Soybean	cytosol, peroxisome	29.19	64.93
KRH48462	Soybean	nucleus, plastid	29.19	64.4
Bra027014.1-P	Field mustard	cytosol	54.31	63.18
CDY46926	Canola	cytosol	54.31	63.18
CDY31848	Canola	nucleus	54.31	62.91
KRH39215	Soybean	nucleus	64.41	62.34
PGSC0003DMT400060071	Potato	peroxisome	36.33	59.96
GSMUA_Achr3P06520_001	Banana	extracellular, nucleus, peroxisome	22.66	59.74
AT1G62830.1	Thale cress	nucleus	61.21	58.89
GSMUA_Achr9P14930_001	Banana	nucleus	49.75	57.71
TraesCS6A01G318300.1	Wheat	nucleus	54.19	53.53
TraesCS6B01G348300.1	Wheat	nucleus	54.06	53.21
Zm00001d018102_P001	Maize	nucleus	55.05	52.65
OQU85392	Sorghum	nucleus	55.05	52.59
Os02t0755200-01	Rice	nucleus	54.8	52.41
HORVU6Hr1G078160.1	Barley	plastid	54.06	50.29
TraesCS6D01G297500.1	Wheat	plastid	54.31	50.29
PGSC0003DMT400049658	Potato	cytosol	46.55	49.8
PGSC0003DMT400060365	Potato	plastid	31.65	47.42
PGSC0003DMT400019222	Potato	cytosol, plastid	50.74	41.37
PGSC0003DMT400041150	Potato	cytosol, mitochondrion, peroxisome, plastid	18.6	30.82
PGSC0003DMT400061872	Potato	cytosol	17.86	30.33
PGSC0003DMT400074125	Potato	plastid	18.23	30.33
PGSC0003DMT400050770	Potato	cytosol	17.73	29.09
PGSC0003DMT400055123	Potato	cytosol	15.76	24.62
PGSC0003DMT400017667	Potato	vacuole	14.66	24.04
PGSC0003DMT400045965	Potato	endoplasmic reticulum	15.15	23.65
PGSC0003DMT400094539	Potato	golgi	15.15	22.78
PGSC0003DMT400009649	Potato	cytosol	27.34	17.13
PGSC0003DMT400000891	Potato	endoplasmic reticulum	15.15	15.36

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:102604901	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10	InterPro:Amino_oxidase
ncoils:Coil	InterPro:FAD/NAD-bd_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016491	GO:GO:0016575	GO:GO:0019538	GO:GO:0048364	GO:GO:0051568	GO:GO:0055114
InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR036188	InterPro:IPR036388	UniProt:M1DVZ2	PFAM:PF01593
PFAM:PF04433	EnsemblPlantsGene:PGSC0003DMG400044864	PGSC:PGSC0003DMG400044864	EnsemblPlants:PGSC0003DMT400095293	PFscan:PS50934	PANTHER:PTHR10742
PANTHER:PTHR10742:SF353	SUPFAM:SSF46689	SUPFAM:SSF51905	SUPFAM:SSF54373	InterPro:SWIRM	UniParc:UPI000295F6B1
InterPro:WH-like_DNA-bd_sf	RefSeq:XP_006359789.1	SEG:seg	:	:	:

Description

Flavin-containing amine oxidase domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400044864]

Coordinates

chr10:-:30105459..30107897

Molecular Weight (calculated)

89118.5 Da

IEP (calculated)

6.107

GRAVY (calculated)

-0.164

Length

812 amino acids

Sequence
(BLAST)

001: METSAGHPPE TSHNVNSDEI LRQDNHHNAN FSPPQTTSEA AVSDSQLDDL PKSSETKISS DLPPPTGVTP PQVKRRRRRK RFFTDLIPPS VSAAAVNGLR
101: VLRPNPKPST AYSYSETELA TGDDLSKNHN RRRRMSDLAK EVDVEALIAI SVGFPVDSLT EEEIEANVVS QIGGIEQANY IVVRNHILAR WRSNVTVWLT
201: KDHALESIRA EHKNLVHSAY SFLLHHGYIN FGVAPGIKEV KFKPPEGASK GNVIVIGAGL SGLVAARQLI SLGLKVVVLE GRGRPGGRVR SKKMTGGQNG
301: VVAAADLGGS VLTGINGNPL GVLARQLGVP LHKVRDICPL YLPNGRTVNP DMDSKVEASF NKLLDRVCKL RQAMLDEVKS VDVSLGTALE AFRHVYRVAE
401: DPQEQMLLDW HLANLEYANA SLMSNLSMAF WDQDDPYEMG GDHCFIPGGN ERLIRALAED IPIFYDRTVE SVRYGTDGVL VYAGGQEYHG DMVLCTVPLG
501: VLKKGNIEFV PELPQRKKDA IERLGFGLLN KVAILFPYDF WGGEIDTFGH LTDDPNMRGE FFLFYSYSSV SGGPLLIALV AGEAAVKFEK MSPLESVVRV
601: LEILKGIFSL KGIAVPDPLQ AVCTRWGQDQ LSYGSYSYVA IGASGDDYDI LAESVGDRVF FAGEATSKQY PATMHGAFLS GMREAAHILR VTDRRISPAD
701: TSNTCSQENT SVVDKFFDTP DLKFGNFCVL YDPMSTDLES NCLIRVELQG ERCLHLYSLL SRRLVLELSK LEGDLSRIEM LTRDFGLKLV GWNNLSVAVG
801: SLLTSIESAR SV

Best Arabidopsis Sequence Match ( AT1G62830.1 )
(BLAST)

001: MSTETKETRP ETKPEDLGTH TTVDVPGEEP LGELIADDVN EVVSDASATE TDFSLSPSQS EQNIEEDGQN SLDDQSPLTE LQPLPLPPPL PVEARISESL
101: GEEESSDLVT EQQSQNPNAA EPGPRARKRR RRKRFFTEIN ANPAFSRNRR TSVGKEVDSE ALIAMSVGFP VYSLTEEEIE ANVVSIIGGK DQANYIVVRN
201: HIIALWRSNV SNWLTRDHAL ESIRAEHKTL VDTAYNFLLE HGYINFGLAP VIKEAKLRSF DGVEPPNVVV VGAGLAGLVA ARQLLSMGFR VLVLEGRDRP
301: GGRVKTRKMK GGDGVEAMAD VGGSVLTGIN GNPLGVLARQ LGLPLHKVRD ICPLYLPNGE LADASVDSKI EASFNKLLDR VCKLRQSMIE ENKSVDVPLG
401: EALETFRLVY GVAEDQQERM LLDWHLANLE YANATLLGNL SMAYWDQDDP YEMGGDHCFI PGGNEIFVHA LAENLPIFYG STVESIRYGS NGVLVYTGNK
501: EFHCDMALCT VPLGVLKKGS IEFYPELPHK KKEAIQRLGF GLLNKVAMLF PCNFWGEEID TFGRLTEDPS TRGEFFLFYS YSSVSGGPLL VALVAGDAAE
601: RFETLSPTDS VKRVLQILRG IYHPKGIVVP DPVQALCSRW GQDKFSYGSY SYVAVGSSGD DYDILAESVG DGRVFFAGEA TNRQYPATMH GAFLSGMREA
701: ANILRVARRR ASSSALNPNQ ICIDKEEEVD EEEDRCLDQL FETPDLTFGN FSVLFTPNSD EPESMSLLRV RIQMEKPESG LWLYGLVTRK QAIELGEMDG
801: DELRNEYLRE KLGLVPVERK SLSQEGESMI SSLKAARLNR QIFD

Arabidopsis Description

LDL1Lysine-specific histone demethylase 1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.