Factsheet for PGSC0003DMT400019222

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g008320.1.1	Tomato	nucleus	96.99	96.22
HORVU1Hr1G057320.1	Barley	extracellular, peroxisome	9.14	82.73
PGSC0003DMT400060071	Potato	peroxisome	38.96	78.86
GSMUA_Achr4P25280_001	Banana	plastid	54.92	71.32
KRH71619	Soybean	cytosol	60.84	69.18
EES12649	Sorghum	plastid	54.62	67.33
Zm00001d002684_P001	Maize	extracellular	54.42	67.08
Os04t0560300-01	Rice	cytosol	54.62	67.08
TraesCS2B01G425100.1	Wheat	plastid	53.92	66.54
CDY00667	Canola	cytosol, plastid	60.74	66.19
CDX73929	Canola	nucleus, plastid	60.84	65.73
Bra001357.1-P	Field mustard	nucleus, plastid	60.54	65.54
TraesCS2D01G404400.1	Wheat	plastid	53.61	63.8
AT3G10390.3	Thale cress	plastid	59.84	63.68
PGSC0003DMT400060365	Potato	plastid	34.64	63.65
TraesCS2A01G407400.1	Wheat	cytosol	53.51	63.6
VIT_13s0019g04820.t01	Wine grape	nucleus	64.66	62.77
HORVU2Hr1G096300.1	Barley	plastid	28.31	61.98
PGSC0003DMT400049658	Potato	cytosol	38.86	50.99
PGSC0003DMT400095293	Potato	nucleus	41.37	50.74
PGSC0003DMT400041150	Potato	cytosol, mitochondrion, peroxisome, plastid	15.86	32.24
PGSC0003DMT400074125	Potato	plastid	15.76	32.17
PGSC0003DMT400061872	Potato	cytosol	14.46	30.13
PGSC0003DMT400050770	Potato	cytosol	14.46	29.09
PGSC0003DMT400055123	Potato	cytosol	12.75	24.42
PGSC0003DMT400094539	Potato	golgi	12.65	23.33
PGSC0003DMT400045965	Potato	endoplasmic reticulum	11.85	22.69
PGSC0003DMT400017667	Potato	vacuole	11.04	22.22
PGSC0003DMT400009649	Potato	cytosol	23.39	17.98
PGSC0003DMT400000891	Potato	endoplasmic reticulum	12.75	15.86

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:102602563	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10	InterPro:Amino_oxidase
InterPro:FAD/NAD-bd_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:Homeobox-like_sf
InterPro:IPR007526	InterPro:IPR036188	InterPro:IPR036388	UniProt:M1ABS6	PFAM:PF01593	PFAM:PF04433
EnsemblPlantsGene:PGSC0003DMG400007432	PGSC:PGSC0003DMG400007432	EnsemblPlants:PGSC0003DMT400019222	PFscan:PS50934	PANTHER:PTHR10742	PANTHER:PTHR10742:SF260
SUPFAM:SSF46689	SUPFAM:SSF51905	SUPFAM:SSF54373	InterPro:SWIRM	UniParc:UPI0002959320	InterPro:WH-like_DNA-bd_sf
RefSeq:XP_006361683.1	SEG:seg	:	:	:	:

Description

Amine oxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400007432]

Coordinates

chr11:+:3750246..3757229

Molecular Weight (calculated)

108171.0 Da

IEP (calculated)

7.431

GRAVY (calculated)

-0.240

Length

996 amino acids

Sequence
(BLAST)

001: MDPSDNNPSS QQSLPYITSN NPLQFTIHLP NSTPNFTSIS NSNPSHDPNP SPHSDSISDQ LLSLSIPTKR RRGRPRSTTS SSLDQFSKTL VENSNLVRNL
101: TARKNTASFD ASDEIIVINK EATTEALIAL TAGFPADSLT DEEIEAEVVS VVGGIEQVNY ILIRNHILMK WRVNVSTWIT KEMFFDVIPK HCNALLDSAH
201: NYLVSRGYIN FGVVPAIKDR IPAEPSKPSV IIIGAGLAGL AAARQLMLFG FKVTVLEGRK RAGGRVYSKK MEGGNKVAAA DLGGSVLTGT LGNPLGILAR
301: QLSCTLHKVR DKCPLYRVDG KPVDQDLDHK VETAYNLLLE KASKLRQLMG EVSQDVSLGA ALETFRQDYE DAVNEEEMSL FNWHLANLEY ANAGLISKLS
401: LAFWDQDDPF DMGGDHCFLP GGNGKLVHAL TENVPILYEK IVHTIRYGTD GVQVGAGAQV FEGDMVLCTV PLGVLKGGSI KFMPELPQRK LDGIKRLGFG
501: LLNKVAMLFP YVFWGTDLDT FGHLTDNSSS RGEFFLFYSY ATVAGGPLLL ALVAGEAAHK FETMPPTDAV TKVLQILKGI YEPQGIEVPE PIQTVCTRWG
601: SDPFSLGSYS NVAVGASGDD YDILAESVGD GRLFFAGEAT NRRYPATMHG AFLSGLREAA NIAHHAKART MSLKIEKKPS KSTHYYASVL DDLFREPDLE
701: FGSFSIIFAR KSSDLESPAI LRVTFCGPQT RNHDGIRPGR HLSNKLLFQQ LQSQFNNQHE LHVYTLLSKQ QALDLREVRG GDEMRLNFLS EKLGVKLVGR
801: KGLGPSVDSI IASVKAERGR RKPGTLKSGV MKSKDTTLKR KIVRKAKVVS GGNRTTSSPA SSSRIKAVGS STTTIHLTNV DLEPKPVCAI GSVASPSLNI
901: RVNDDMGSKS VGSSVHLLHN ASIGDKFEGN FGSSAAPLLN VGGNTGSNSD GPIYLRSTYD DSTDTFAPPT TGNLASQHTS GDGDMESMML DGEYRM

Best Arabidopsis Sequence Match ( AT3G10390.3 )
(BLAST)

001: MNPPDNYVPS VSHSQFSTPP PPQSSSNTNT ETSLNPFPNS ISTSISNPSF EQMVSFSAPK KRRRGRSQRS MSSLNSLPVP NVGLLPGNSN FVSSSASSSG
101: RFNVEVVNGS NQTVKSYPGI GDEIITINKE ATTEALLALT AGFPADSLTE EEIEFGVVPI VGGIEQVNYI LIRNHIISKW RENISSWVTK EMFLNSIPKH
201: CSSLLDSAYN YLVTHGYINF GIAQAIKDKF PAQSSKSSVI IVGAGLSGLA AARQLMRFGF KVTVLEGRKR PGGRVYTKKM EANRVGAAAD LGGSVLTGTL
301: GNPLGIIARQ LGSSLYKVRD KCPLYRVDGK PVDPDVDIKV EVAFNQLLDK ASKLRQLMGD VSMDVSLGAA LETFRQVSGN DVATEEMGLF NWHLANLEYA
401: NAGLVSKLSL AFWDQDDPYD MGGDHCFLPG GNGRLVQALA ENVPILYEKT VQTIRYGSNG VKVTAGNQVY EGDMVLCTVP LGVLKNGSIK FVPELPQRKL
501: DCIKRLGFGL LNKVAMLFPY VFWSTDLDTF GHLTEDPNYR GEFFLFYSYA PVAGGALLIA LVAGEAAHKF ETMPPTDAVT RVLHILRGIY EPQGINVPDP
601: LQTVCTRWGG DPFSLGSYSN VAVGASGDDY DILAESVGDG RLFFAGEATT RRYPATMHGA FVTGLREAAN MAQSAKARGI RKRIDRNPSR NAHSCAILLA
701: DLFRDPDLEF GSFCIIFSRR NPDPKSPAIL RVTLSEPRKR NEDPKADQHS NKILFQQLQS HFNQQQQIQV YTLLTRQQAL DLREVRGGDE KRLYYLCETL
801: GVKLVGRKGL GVGADSVIAS IKAERTGRKL PSSSTSGTKS GILKAKSGAL KRKMIRRIKG PLPLKQSNNN GVSESIKSES LGNGKSLEQQ QQPRIVESIG
901: GGSSMQGESK SLSTGVASSS GGSLHVGGET MKKIEQ

Arabidopsis Description

FLDProtein FLOWERING locus D-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.