CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 6
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002684_P001	Maize	extracellular	96.04	96.04
HORVU1Hr1G057320.1	Barley	extracellular, peroxisome	12.87	94.55
Os04t0560300-01	Rice	cytosol	89.48	89.15
TraesCS2B01G425100.1	Wheat	plastid	85.02	85.13
HORVU2Hr1G096300.1	Barley	plastid	46.53	82.64
TraesCS2A01G407400.1	Wheat	cytosol	84.78	81.74
TraesCS2D01G404400.1	Wheat	plastid	84.65	81.72
GSMUA_Achr4P25280_001	Banana	plastid	71.29	75.1
PGSC0003DMT400060071	Potato	peroxisome	42.45	69.72
Solyc02g033080.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	27.72	64.55
KRH71619	Soybean	cytosol	68.69	63.36
Solyc05g055590.1.1	Tomato	cytosol	47.65	60.63
CDY00667	Canola	cytosol, plastid	67.2	59.41
Bra001357.1-P	Field mustard	nucleus, plastid	67.2	59.02
CDX73929	Canola	nucleus, plastid	67.33	59.0
AT3G10390.3	Thale cress	plastid	68.32	58.97
VIT_13s0019g04820.t01	Wine grape	nucleus	71.04	55.95
PGSC0003DMT400019222	Potato	cytosol, plastid	67.33	54.62
Solyc11g008320.1.1	Tomato	nucleus	66.96	53.88
PGSC0003DMT400060365	Potato	plastid	35.89	53.51
EES14528	Sorghum	mitochondrion, nucleus, plasma membrane, plastid	42.82	45.47
OQU85392	Sorghum	nucleus	47.77	45.41
Solyc05g055580.1.1	Tomato	cytosol, peroxisome, plastid	32.3	45.0
EES13072	Sorghum	plastid	19.8	32.59
EES13070	Sorghum	cytosol, peroxisome, plastid	19.31	32.03
EES12883	Sorghum	cytosol, mitochondrion, peroxisome, plastid	17.95	30.02
EES03507	Sorghum	mitochondrion	16.71	26.21
KXG39969	Sorghum	vacuole	16.09	25.49
OQU80059	Sorghum	peroxisome	15.59	22.5
EER94594	Sorghum	nucleus	30.32	13.62

Protein Annotations

Gene3D:1.10.10.10	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10	InterPro:Amino_oxidase	UniProt:C5YDX6
EnsemblPlants:EES12649	ProteinID:EES12649	ProteinID:EES12649.1	InterPro:FAD/NAD-bd_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0055114	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR036188	InterPro:IPR036388
PFAM:PF01593	PFAM:PF04433	PFscan:PS50934	PANTHER:PTHR10742	PANTHER:PTHR10742:SF260	EnsemblPlantsGene:SORBI_3006G177200
SUPFAM:SSF46689	SUPFAM:SSF51905	SUPFAM:SSF54373	InterPro:SWIRM	UniParc:UPI0001A87658	InterPro:WH-like_DNA-bd_sf
RefSeq:XP_002448321.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:53221111..53224410

Molecular Weight (calculated)

87025.3 Da

IEP (calculated)

8.300

GRAVY (calculated)

-0.164

Length

808 amino acids

Sequence
(BLAST)

001: MSEQAPPYAP LPLVSSLAPD PSSTPSPNPT LVLPNPVFPN KRKRTGFRRK VPSGAPAAHA PSPVAPSQPP PPASAADDII VINREPTAEA VTALTAGFPA
101: DSLTDEEIEA GVVSDVGGIE QVNYILIRNH LLCRWRETYN SWLAKEPFAT LIPPHCEHLL TAAYSFLVSN SYINFGVAPA IKERIPKEPT RPTTVIVVGA
201: GLAGLAAARQ LVAFGFKVIV LEGRKRCGGR VYTKKMEGGG RMAAADLGGS VLTGTFGNPL GIVAKQLGLP MHKIRDKCPL YRPDGSPVDP EVDKNVEITF
301: NKLLDKSSNL RASMGEVAVD VSLGAALETL RQADGGVSTQ EEMNLFNWHL ANLEYANAGL LSRLSLAFWD QDDPYDMGGD HCFLPGGNGK LVQALAENVA
401: IVYERTVHTI RYGGDGVQVV VNGGQVYEGD MALCTVPLGV LKNGGIKFVP ELPQRKLDSI KRLGFGLLNK VSMLFPHVFW STDLDTFGHL VEDPRRRGEF
501: FLFYSYATVA GGPLLMALVA GEAAHNFETT PPTDAVSSVL QILRGIYEPQ GIEVPDPLQS VCTRWGTDSF SLGSYSHVAV GASGDDYDIL AESVGDGRLF
601: FAGEATTRRY PATMHGAFIS GLREAANMTL HANARAAKNK VDKSPSTNTQ ACAAILTDLF RQPDLEFGSF SVIFGGKASD PKSPAILKVE LGASRKKNAA
701: EGVKTEQNHS NKLLFQQLQS HFNQQQQLYV YTLLSRQQAM ELREVRGGDD MRLHYLCEKL GVKLVGRKGL GPGADAVIAS IKAERNRGRT RPGPSKLKKS
801: LKPNVAAS

Best Arabidopsis Sequence Match ( AT3G10390.2 )
(BLAST)

001: MNPPDNYVPS VSHSQFSTPP PPQSSSNTNT ETSLNPFPNS ISTSISNPSF EQMVSFSAPK KRRRGRSQRS MSSLNSLPVP NVGLLPGNSN FVSSSASSSG
101: RFNVEVVNGS NQTVKSYPGI GDEIITINKE ATTEALLALT AGFPADSLTE EEIEFGVVPI VGGIEQVNYI LIRNHIISKW RENISSWVTK EMFLNSIPKH
201: CSSLLDSAYN YLVTHGYINF GIAQAIKDKF PAQSSKSSVI IVGAGLSGLA AARQLMRFGF KVTVLEGRKR PGGRVYTKKM EANRVGAAAD LGGSVLTGTL
301: GNPLGIIARQ LGSSLYKVRD KCPLYRVDGK PVDPDVDIKV EVAFNQLLDK ASKLRQLMGD VSMDVSLGAA LETFRQVSGN DVATEEMGLF NWHLANLEYA
401: NAGLVSKLSL AFWDQDDPYD MGGDHCFLPG GNGRLVQALA ENVPILYEKT VQTIRYGSNG VKVTAGNQVY EGDMVLCTVP LGVLKNGSIK FVPELPQRKL
501: DCIKRLGFGL LNKVAMLFPY VFWSTDLDTF GHLTEDPNYR GEFFLFYSYA PVAGGALLIA LVAGEAAHKF ETMPPTDAVT RVLHILRGIY EPQGINVPDP
601: LQTVCTRWGG DPFSLGSYSN VAVGASGDDY DILAESVGDG RLFFAGEATT RRYPATMHGA FVTGLREAAN MAQSAKARGI RKRIDRNPSR NAHSCAILLA
701: DLFRDPDLEF GSFCIIFSRR NPDPKSPAIL RVTLSEPRKR NEDPKADQHS NKILFQQLQS HFNQQQQIQV YTLLTRQQAL DLREVRGGDE KRLYYLCETL
801: GVKLVGRKGL GVGADSVIAS IKAERTGRKL PSSSTSGTKS GILKAKSGAL KRKMIRRIKG PLPLKQSNNN GVSESIKSES LGNGKSLEQQ QQPRIVESIG
901: GGSSMQGESK SLSTGVASSS GIHFS

Arabidopsis Description

FLDProtein FLOWERING locus D-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.