Factsheet for PGSC0003DMT400060365

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
endoplasmic reticulum 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g033080.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	53.32	83.29
PGSC0003DMT400060071	Potato	peroxisome	63.84	70.33
Solyc05g055580.1.1	Tomato	cytosol, peroxisome, plastid	67.53	63.1
HORVU2Hr1G096300.1	Barley	plastid	45.39	54.07
HORVU1Hr1G057320.1	Barley	extracellular, peroxisome	10.89	53.64
GSMUA_Achr4P25280_001	Banana	plastid	54.8	38.72
EES12649	Sorghum	plastid	53.51	35.89
Zm00001d002684_P001	Maize	extracellular	53.51	35.89
Os04t0560300-01	Rice	cytosol	53.69	35.88
TraesCS2B01G425100.1	Wheat	plastid	53.14	35.69
KRH71619	Soybean	cytosol	57.38	35.5
PGSC0003DMT400019222	Potato	cytosol, plastid	63.65	34.64
TraesCS2D01G404400.1	Wheat	plastid	52.95	34.29
TraesCS2A01G407400.1	Wheat	cytosol	52.95	34.25
AT3G10390.3	Thale cress	plastid	58.3	33.76
CDY00667	Canola	cytosol, plastid	56.83	33.7
CDX73929	Canola	nucleus, plastid	56.83	33.41
Bra001357.1-P	Field mustard	nucleus, plastid	56.46	33.26
PGSC0003DMT400049658	Potato	cytosol	45.76	32.67
VIT_13s0019g04820.t01	Wine grape	nucleus	60.15	31.77
PGSC0003DMT400095293	Potato	nucleus	47.42	31.65
PGSC0003DMT400074125	Potato	plastid	21.77	24.18
PGSC0003DMT400041150	Potato	cytosol, mitochondrion, peroxisome, plastid	21.22	23.47
PGSC0003DMT400061872	Potato	cytosol	20.3	23.01
PGSC0003DMT400050770	Potato	cytosol	20.66	22.63
PGSC0003DMT400055123	Potato	cytosol	15.31	15.96
PGSC0003DMT400017667	Potato	vacuole	14.58	15.96
PGSC0003DMT400094539	Potato	golgi	15.87	15.93
PGSC0003DMT400045965	Potato	endoplasmic reticulum	14.94	15.58
PGSC0003DMT400009649	Potato	cytosol	26.94	11.27
PGSC0003DMT400000891	Potato	endoplasmic reticulum	15.68	10.61

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:102592101	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10	InterPro:Amino_oxidase
InterPro:FAD/NAD-bd_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:Homeobox-like_sf
InterPro:IPR007526	InterPro:IPR036188	InterPro:IPR036388	UniProt:M1C5Q6	PFAM:PF01593	PFAM:PF04433
EnsemblPlantsGene:PGSC0003DMG400023479	PGSC:PGSC0003DMG400023479	EnsemblPlants:PGSC0003DMT400060365	PFscan:PS50934	PANTHER:PTHR10742	PANTHER:PTHR10742:SF260
SUPFAM:SSF46689	SUPFAM:SSF51905	InterPro:SWIRM	UniParc:UPI000296AC0C	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_006345993.1
SEG:seg	:	:	:	:	:

Description

Amine oxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400023479]

Coordinates

chr5:+:51242071..51243699

Molecular Weight (calculated)

59654.1 Da

IEP (calculated)

5.953

GRAVY (calculated)

-0.228

Length

542 amino acids

Sequence
(BLAST)

001: MNRRRGRSGS KLSLDEVSSD FLGNTNEEQS ALVSSSSSGK VSKTQVKSSD SANRNVNSKV VRSRKSRKEV VSDEAICINK ESNSEALVAL TAGFPSDSLK
101: DEEIEAGVVS VVGGIEQCNY ILIRNHIITK WRENVSIWLT KDMFVDIIPE GCSGLLDSAY NYLLSYGYVN FGVALAIKDK IPTRPSKGRV IVIGAGLAGL
201: AAARQLMLFG FEVIVLEGRK RAGGRVYTKK MEGGNKVATA DLGGSVLTGT LGNPLGLLAR QLSYTLHTVS DQCPLYRADG KPVDEYLDKK VEVAYNELLD
301: KASKVRQELS PIISLGEALE TLRKDFSVAM NDEEMNLFNW HLVNLEYANA GLLSQLSLAF WDQDDPYDMG GDHCFLPGEN GRLVHALAEN VPIMFEKTVY
401: AIRYGRDSVK VITADQLFER DMALCTVPLG VLKSGSITFI PELPQQKLDT IKRLGFGLLN KVALIFPYVF WDSNIDTFGH VADDSSSQAD GNPVDEHLDK
501: KVVLPDKASS GKKFSQDWKH RSISSLQEYS NLEEVRSLTT NQ

Best Arabidopsis Sequence Match ( AT1G62830.1 )
(BLAST)

001: MSTETKETRP ETKPEDLGTH TTVDVPGEEP LGELIADDVN EVVSDASATE TDFSLSPSQS EQNIEEDGQN SLDDQSPLTE LQPLPLPPPL PVEARISESL
101: GEEESSDLVT EQQSQNPNAA EPGPRARKRR RRKRFFTEIN ANPAFSRNRR TSVGKEVDSE ALIAMSVGFP VYSLTEEEIE ANVVSIIGGK DQANYIVVRN
201: HIIALWRSNV SNWLTRDHAL ESIRAEHKTL VDTAYNFLLE HGYINFGLAP VIKEAKLRSF DGVEPPNVVV VGAGLAGLVA ARQLLSMGFR VLVLEGRDRP
301: GGRVKTRKMK GGDGVEAMAD VGGSVLTGIN GNPLGVLARQ LGLPLHKVRD ICPLYLPNGE LADASVDSKI EASFNKLLDR VCKLRQSMIE ENKSVDVPLG
401: EALETFRLVY GVAEDQQERM LLDWHLANLE YANATLLGNL SMAYWDQDDP YEMGGDHCFI PGGNEIFVHA LAENLPIFYG STVESIRYGS NGVLVYTGNK
501: EFHCDMALCT VPLGVLKKGS IEFYPELPHK KKEAIQRLGF GLLNKVAMLF PCNFWGEEID TFGRLTEDPS TRGEFFLFYS YSSVSGGPLL VALVAGDAAE
601: RFETLSPTDS VKRVLQILRG IYHPKGIVVP DPVQALCSRW GQDKFSYGSY SYVAVGSSGD DYDILAESVG DGRVFFAGEA TNRQYPATMH GAFLSGMREA
701: ANILRVARRR ASSSALNPNQ ICIDKEEEVD EEEDRCLDQL FETPDLTFGN FSVLFTPNSD EPESMSLLRV RIQMEKPESG LWLYGLVTRK QAIELGEMDG
801: DELRNEYLRE KLGLVPVERK SLSQEGESMI SSLKAARLNR QIFD

Arabidopsis Description

LDL1Lysine-specific histone demethylase 1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.