Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G057320.1 | Barley | extracellular, peroxisome | 12.39 | 86.36 |
| Os04t0560300-01 | Rice | cytosol | 75.75 | 71.64 |
| PGSC0003DMT400060071 | Potato | peroxisome | 45.76 | 71.34 |
| Zm00001d002684_P001 | Maize | extracellular | 75.1 | 71.29 |
| EES12649 | Sorghum | plastid | 75.1 | 71.29 |
| TraesCS2B01G425100.1 | Wheat | plastid | 73.79 | 70.14 |
| TraesCS2D01G404400.1 | Wheat | plastid | 73.4 | 67.26 |
| HORVU2Hr1G096300.1 | Barley | plastid | 39.77 | 67.03 |
| TraesCS2A01G407400.1 | Wheat | cytosol | 73.01 | 66.83 |
| Solyc02g033080.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 28.94 | 63.98 |
| KRH71619 | Soybean | cytosol | 72.49 | 63.47 |
| Solyc05g055590.1.1 | Tomato | cytosol | 51.37 | 62.05 |
| CDY00667 | Canola | cytosol, plastid | 71.19 | 59.74 |
| Bra001357.1-P | Field mustard | nucleus, plastid | 71.19 | 59.35 |
| CDX73929 | Canola | nucleus, plastid | 71.19 | 59.22 |
| AT3G10390.3 | Thale cress | plastid | 71.45 | 58.55 |
| GSMUA_Achr3P06520_001 | Banana | extracellular, nucleus, peroxisome | 23.08 | 57.47 |
| VIT_13s0019g04820.t01 | Wine grape | nucleus | 75.49 | 56.43 |
| PGSC0003DMT400019222 | Potato | cytosol, plastid | 71.32 | 54.92 |
| PGSC0003DMT400060365 | Potato | plastid | 38.72 | 54.8 |
| Solyc11g008320.1.1 | Tomato | nucleus | 71.45 | 54.58 |
| GSMUA_Achr5P26260_001 | Banana | plastid | 44.2 | 48.99 |
| GSMUA_Achr9P14930_001 | Banana | nucleus | 42.76 | 46.86 |
| Solyc05g055580.1.1 | Tomato | cytosol, peroxisome, plastid | 33.9 | 44.83 |
| GSMUA_Achr9P21250_001 | Banana | plastid | 19.69 | 31.01 |
| GSMUA_Achr5P00660_001 | Banana | peroxisome | 19.3 | 30.52 |
| GSMUA_AchrUn_... | Banana | plastid | 18.9 | 29.12 |
| GSMUA_Achr11P... | Banana | mitochondrion | 19.04 | 28.24 |
| GSMUA_Achr3P32350_001 | Banana | mitochondrion | 16.69 | 25.3 |
| GSMUA_Achr5P08640_001 | Banana | cytosol, nucleus, peroxisome | 14.34 | 24.34 |
| GSMUA_Achr4P15860_001 | Banana | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 13.04 | 24.27 |
| GSMUA_Achr6P24910_001 | Banana | endoplasmic reticulum | 8.6 | 24.26 |
| GSMUA_Achr6P24880_001 | Banana | cytosol | 8.47 | 23.05 |
| GSMUA_Achr6P24870_001 | Banana | vacuole | 6.91 | 20.87 |
| GSMUA_Achr6P24900_001 | Banana | vacuole | 7.69 | 19.41 |
| GSMUA_Achr2P09900_001 | Banana | cytosol | 31.68 | 17.17 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:12.3.3.8.1 | Gene3D:3.50.50.60 | Gene3D:3.90.660.10 | InterPro:Amino_oxidase | InterPro:FAD/NAD-bd_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | EnsemblPlantsGene:GSMUA_Achr4G25280_001 | EnsemblPlants:GSMUA_Achr4P25280_001 |
| EnsemblPlants:GSMUA_Achr4T25280_001 | InterPro:Homeobox-like_sf | InterPro:IPR007526 | InterPro:IPR036188 | InterPro:IPR036388 | UniProt:M0SRY9 |
| PFAM:PF01593 | PFAM:PF04433 | PANTHER:PTHR10742 | SUPFAM:SSF46689 | SUPFAM:SSF51905 | SUPFAM:SSF54373 |
| InterPro:SWIRM | UniParc:UPI00029596D9 | InterPro:WH-like_DNA-bd_sf | SEG:seg | : | : |
Description
Lysine-specific histone demethylase 1 homolog 3 [Source:GMGC_GENE;Acc:GSMUA_Achr4G25280_001]
Coordinates
chr4:+:24852892..24857353
Molecular Weight (calculated)
83154.8 Da
IEP (calculated)
6.988
GRAVY (calculated)
-0.148
Length
767 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDQNPLPPP PPPFTIGPPF SAPLVPQNPN PNLHPNFYLN PSPNFHLQVP FQTKRKRTGV RRRAAAPPSS VALPPPLPSL APPPPAPSNP LPDPGPQNPD
101: PDISEEIIVI NKEATTEALT ALTAGFPADS LTEEEIEAGV VSSIGGIEQV NYILIRNHIL SRWRENVSNW LTKEAFVSVI PPHYEPLLNS AYNFLPTKAN
201: VVIVGAGLAG LAAARQLMSF GFKVVVLEGR KRCGGRVYTK RMEGANKFAA ADLGGSVLTG TLGNPLGIIA KQLGSTLHKV RDKCPLYRPD GKPVDPDLDT
301: KVENAFNKLL DKASRLRLCM GEVAMDVSLG AALETFRQVY GDAVTEEEMN LFNWHLANLE YANAGLLSKL SLAFWDQDDP YDMGGDHCFL PGGNGRLVQA
401: LSENVPIIYE KTVHAIRYGG DGVQVISGSQ VYEGDMALCT VPLGVLKNGS IKFVPELPQR KLDGIKRLGF GLLNKVAMLF PHVFWNMDID TFGHLSDNPS
501: HRGEFFLFYS YATVAGGPLL IALVAGEAAH NFETMPPTDA VTLVLQILRG IFEPQGIEVP DPLQSVCTRW GTDSFSLGSY SHVAVGASGD DYDILAESVG
601: DGRLFFAGEA TTRRYPATMH GAFISGLREA ANMAHHANAR ALQIKVERSP SKNTQACAAL LADLFREPDL EFGSFSVIFG RKTSDPKSPA IIRVSLGGPR
701: KKNTNELHVY TLLSRQQALD LREVRGGDDM RLFYLTEKLG VKLVGRRGLG PAADSAIASI KAERGNR
101: PDISEEIIVI NKEATTEALT ALTAGFPADS LTEEEIEAGV VSSIGGIEQV NYILIRNHIL SRWRENVSNW LTKEAFVSVI PPHYEPLLNS AYNFLPTKAN
201: VVIVGAGLAG LAAARQLMSF GFKVVVLEGR KRCGGRVYTK RMEGANKFAA ADLGGSVLTG TLGNPLGIIA KQLGSTLHKV RDKCPLYRPD GKPVDPDLDT
301: KVENAFNKLL DKASRLRLCM GEVAMDVSLG AALETFRQVY GDAVTEEEMN LFNWHLANLE YANAGLLSKL SLAFWDQDDP YDMGGDHCFL PGGNGRLVQA
401: LSENVPIIYE KTVHAIRYGG DGVQVISGSQ VYEGDMALCT VPLGVLKNGS IKFVPELPQR KLDGIKRLGF GLLNKVAMLF PHVFWNMDID TFGHLSDNPS
501: HRGEFFLFYS YATVAGGPLL IALVAGEAAH NFETMPPTDA VTLVLQILRG IFEPQGIEVP DPLQSVCTRW GTDSFSLGSY SHVAVGASGD DYDILAESVG
601: DGRLFFAGEA TTRRYPATMH GAFISGLREA ANMAHHANAR ALQIKVERSP SKNTQACAAL LADLFREPDL EFGSFSVIFG RKTSDPKSPA IIRVSLGGPR
701: KKNTNELHVY TLLSRQQALD LREVRGGDDM RLFYLTEKLG VKLVGRRGLG PAADSAIASI KAERGNR
001: MNPPDNYVPS VSHSQFSTPP PPQSSSNTNT ETSLNPFPNS ISTSISNPSF EQMVSFSAPK KRRRGRSQRS MSSLNSLPVP NVGLLPGNSN FVSSSASSSG
101: RFNVEVVNGS NQTVKSYPGI GDEIITINKE ATTEALLALT AGFPADSLTE EEIEFGVVPI VGGIEQVNYI LIRNHIISKW RENISSWVTK EMFLNSIPKH
201: CSSLLDSAYN YLVTHGYINF GIAQAIKDKF PAQSSKSSVI IVGAGLSGLA AARQLMRFGF KVTVLEGRKR PGGRVYTKKM EANRVGAAAD LGGSVLTGTL
301: GNPLGIIARQ LGSSLYKVRD KCPLYRVDGK PVDPDVDIKV EVAFNQLLDK ASKLRQLMGD VSMDVSLGAA LETFRQVSGN DVATEEMGLF NWHLANLEYA
401: NAGLVSKLSL AFWDQDDPYD MGGDHCFLPG GNGRLVQALA ENVPILYEKT VQTIRYGSNG VKVTAGNQVY EGDMVLCTVP LGVLKNGSIK FVPELPQRKL
501: DCIKRLGFGL LNKVAMLFPY VFWSTDLDTF GHLTEDPNYR GEFFLFYSYA PVAGGALLIA LVAGEAAHKF ETMPPTDAVT RVLHILRGIY EPQGINVPDP
601: LQTVCTRWGG DPFSLGSYSN VAVGASGDDY DILAESVGDG RLFFAGEATT RRYPATMHGA FVTGLREAAN MAQSAKARGI RKRIDRNPSR NAHSCAILLA
701: DLFRDPDLEF GSFCIIFSRR NPDPKSPAIL RVTLSEPRKR NEDPKADQHS NKILFQQLQS HFNQQQQIQV YTLLTRQQAL DLREVRGGDE KRLYYLCETL
801: GVKLVGRKGL GVGADSVIAS IKAERTGRKL PSSSTSGTKS GILKAKSGAL KRKMIRRIKG PLPLKQSNNN GVSESIKSES LGNGKSLEQQ QQPRIVESIG
901: GGSSMQGESK SLSTGVASSS GGSLHVGGET MKKIEQ
101: RFNVEVVNGS NQTVKSYPGI GDEIITINKE ATTEALLALT AGFPADSLTE EEIEFGVVPI VGGIEQVNYI LIRNHIISKW RENISSWVTK EMFLNSIPKH
201: CSSLLDSAYN YLVTHGYINF GIAQAIKDKF PAQSSKSSVI IVGAGLSGLA AARQLMRFGF KVTVLEGRKR PGGRVYTKKM EANRVGAAAD LGGSVLTGTL
301: GNPLGIIARQ LGSSLYKVRD KCPLYRVDGK PVDPDVDIKV EVAFNQLLDK ASKLRQLMGD VSMDVSLGAA LETFRQVSGN DVATEEMGLF NWHLANLEYA
401: NAGLVSKLSL AFWDQDDPYD MGGDHCFLPG GNGRLVQALA ENVPILYEKT VQTIRYGSNG VKVTAGNQVY EGDMVLCTVP LGVLKNGSIK FVPELPQRKL
501: DCIKRLGFGL LNKVAMLFPY VFWSTDLDTF GHLTEDPNYR GEFFLFYSYA PVAGGALLIA LVAGEAAHKF ETMPPTDAVT RVLHILRGIY EPQGINVPDP
601: LQTVCTRWGG DPFSLGSYSN VAVGASGDDY DILAESVGDG RLFFAGEATT RRYPATMHGA FVTGLREAAN MAQSAKARGI RKRIDRNPSR NAHSCAILLA
701: DLFRDPDLEF GSFCIIFSRR NPDPKSPAIL RVTLSEPRKR NEDPKADQHS NKILFQQLQS HFNQQQQIQV YTLLTRQQAL DLREVRGGDE KRLYYLCETL
801: GVKLVGRKGL GVGADSVIAS IKAERTGRKL PSSSTSGTKS GILKAKSGAL KRKMIRRIKG PLPLKQSNNN GVSESIKSES LGNGKSLEQQ QQPRIVESIG
901: GGSSMQGESK SLSTGVASSS GGSLHVGGET MKKIEQ
Arabidopsis Description
FLDProtein FLOWERING locus D-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNW6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.