CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001357.1-P	Field mustard	nucleus, plastid	99.35	99.57
CDY00667	Canola	cytosol, plastid	95.44	96.28
HORVU1Hr1G057320.1	Barley	extracellular, peroxisome	9.98	83.64
AT3G10390.3	Thale cress	plastid	83.95	82.69
PGSC0003DMT400060071	Potato	peroxisome	38.83	72.76
GSMUA_Achr4P25280_001	Banana	plastid	59.22	71.19
KRH71619	Soybean	cytosol	65.73	69.18
Os04t0560300-01	Rice	cytosol	60.3	68.56
Zm00001d002684_P001	Maize	extracellular	59.22	67.57
TraesCS2B01G425100.1	Wheat	plastid	59.0	67.41
EES12649	Sorghum	plastid	59.0	67.33
Solyc02g033080.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	24.73	65.71
TraesCS2D01G404400.1	Wheat	plastid	58.68	64.64
TraesCS2A01G407400.1	Wheat	cytosol	58.57	64.44
Solyc05g055590.1.1	Tomato	cytosol	43.82	63.62
HORVU2Hr1G096300.1	Barley	plastid	30.69	62.2
PGSC0003DMT400019222	Potato	cytosol, plastid	65.73	60.84
VIT_13s0019g04820.t01	Wine grape	nucleus	66.92	60.14
Solyc11g008320.1.1	Tomato	nucleus	64.75	59.46
PGSC0003DMT400060365	Potato	plastid	33.41	56.83
CDY55139	Canola	endoplasmic reticulum, extracellular	34.92	55.33
CDY46926	Canola	cytosol	39.48	52.15
CDY31848	Canola	nucleus	39.48	51.93
CDY55136	Canola	cytosol	40.46	51.03
CDY51731	Canola	cytosol	40.46	50.96
Solyc05g055580.1.1	Tomato	cytosol, peroxisome, plastid	28.63	45.52
CDY42808	Canola	peroxisome	16.27	31.25
CDX83508	Canola	peroxisome	16.05	30.83
CDY53655	Canola	peroxisome	16.05	30.2
CDY14867	Canola	peroxisome	16.05	30.2
CDY55500	Canola	peroxisome	15.94	30.0
CDY30376	Canola	peroxisome	15.94	30.0
CDX67773	Canola	peroxisome	15.51	29.24
CDY54438	Canola	cytosol, peroxisome, plastid	15.94	28.82
CDY16424	Canola	cytosol, peroxisome, plastid	15.62	28.63
CDY54281	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	14.75	27.76
CDX98346	Canola	cytosol	16.16	27.14
CDY30206	Canola	mitochondrion	14.43	26.44
CDY43522	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	13.67	25.4
CDY06780	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	14.1	24.07
CDX78534	Canola	extracellular	11.17	21.46
CDX70516	Canola	extracellular	10.95	21.44
CDY22771	Canola	nucleus	27.44	16.04
CDY42542	Canola	nucleus	27.55	15.94

Protein Annotations

Gene3D:1.10.10.10	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10	GO:A0A078CCJ1	InterPro:Amino_oxidase
EnsemblPlants:CDX73929	ProteinID:CDX73929	ProteinID:CDX73929.1	InterPro:FAD/NAD-bd_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00111657001	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR036188
InterPro:IPR036388	PFAM:PF01593	PFAM:PF04433	PFscan:PS50934	PANTHER:PTHR10742	PANTHER:PTHR10742:SF260
SUPFAM:SSF46689	SUPFAM:SSF51905	SUPFAM:SSF54373	InterPro:SWIRM	UniParc:UPI0004EF4C4D	InterPro:WH-like_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

BnaA03g31180D

Coordinates

chrLK031800:-:571687..574823

Molecular Weight (calculated)

100512.0 Da

IEP (calculated)

7.544

GRAVY (calculated)

-0.327

Length

922 amino acids

Sequence
(BLAST)

001: MNPPDNNQDY APSLPHSQLP TPPPQSNSNP NPDPTSISIS NPSFEQMVSF SAPKKRRRGR SQRSTSSFHT LPNPGGILPN IDAAPRSTNP GIGDEIITIN
101: KDATTEALLA LTAGFPADSL TEEEIDFGVV PVVGGIEQVN YILIRNHIIS KWRENISSWI AKESFLDSIP NHCISLLDSA YDYLVLHGYI NFGISQAVKD
201: KVPPTQQQQS KPSVVIVGAG LSGLAAARQL LRFGFKVTVL EGRKRPGGRV YTKRMEGNRV EAAADLGGSV LTGTLGNPLG IIARQLGCSL YKVRDKCPLY
301: RVDGKPVDPD LDMKVEGAFN RLLDKASKLR QLMGDVSMDV SLGAALETFR QVYGDATEEM SLFNWHLANL EYANAGLVSK LSLAFWDQDD PYDMGGDHCF
401: LPGGNGRLVH ALAENVPILY EKTVQTIRYG ADGVKVTAGH QVYEGDMVLC TVPLGVLKNG SIKFVPELPQ RKLDCIKRLG FGLLNKVAML FPFVFWGTDL
501: DTFGHLTEDP ANRGEFFLFY SYAQVAGGPL LIALVAGEAA HKFETMPPTD AVTRVLQILR GMYEPQGINV PDPIQTVCTR WGGDPFSFGS YSNVAVGASG
601: DDYDILAESV GDGRLFFAGE ATTRRYPATM HGAFVTGLRE AANMAQSAKS RGIRKRIDRN PSKNPHACAT LLADLFRDPD LEFGSFSIIF SRRNPDPKSP
701: AILRVTLSEP CKRNEDPVAD QYSNKILFQQ LQSHFNQQQQ IQVYTLLTRQ QALYLREVRG GDEKRLYYLC ETLGVKLVGR KGLGIGADSV IASIKAERTG
801: RKPALSSSGT KSEGMLKVKS SALKRKLIRR IKGPVPLNQN NNGDSETVKH ESLGNGKASM QATIAEAIGS SNTQEESKWL STGVASSSDD GMSEQNLTQA
901: NEFDEDKNKC SSGLNSDPSQ AT

Best Arabidopsis Sequence Match ( AT3G10390.3 )
(BLAST)

001: MNPPDNYVPS VSHSQFSTPP PPQSSSNTNT ETSLNPFPNS ISTSISNPSF EQMVSFSAPK KRRRGRSQRS MSSLNSLPVP NVGLLPGNSN FVSSSASSSG
101: RFNVEVVNGS NQTVKSYPGI GDEIITINKE ATTEALLALT AGFPADSLTE EEIEFGVVPI VGGIEQVNYI LIRNHIISKW RENISSWVTK EMFLNSIPKH
201: CSSLLDSAYN YLVTHGYINF GIAQAIKDKF PAQSSKSSVI IVGAGLSGLA AARQLMRFGF KVTVLEGRKR PGGRVYTKKM EANRVGAAAD LGGSVLTGTL
301: GNPLGIIARQ LGSSLYKVRD KCPLYRVDGK PVDPDVDIKV EVAFNQLLDK ASKLRQLMGD VSMDVSLGAA LETFRQVSGN DVATEEMGLF NWHLANLEYA
401: NAGLVSKLSL AFWDQDDPYD MGGDHCFLPG GNGRLVQALA ENVPILYEKT VQTIRYGSNG VKVTAGNQVY EGDMVLCTVP LGVLKNGSIK FVPELPQRKL
501: DCIKRLGFGL LNKVAMLFPY VFWSTDLDTF GHLTEDPNYR GEFFLFYSYA PVAGGALLIA LVAGEAAHKF ETMPPTDAVT RVLHILRGIY EPQGINVPDP
601: LQTVCTRWGG DPFSLGSYSN VAVGASGDDY DILAESVGDG RLFFAGEATT RRYPATMHGA FVTGLREAAN MAQSAKARGI RKRIDRNPSR NAHSCAILLA
701: DLFRDPDLEF GSFCIIFSRR NPDPKSPAIL RVTLSEPRKR NEDPKADQHS NKILFQQLQS HFNQQQQIQV YTLLTRQQAL DLREVRGGDE KRLYYLCETL
801: GVKLVGRKGL GVGADSVIAS IKAERTGRKL PSSSTSGTKS GILKAKSGAL KRKMIRRIKG PLPLKQSNNN GVSESIKSES LGNGKSLEQQ QQPRIVESIG
901: GGSSMQGESK SLSTGVASSS GGSLHVGGET MKKIEQ

Arabidopsis Description

FLDProtein FLOWERING locus D-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.