CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid, nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024647_P001	Maize	mitochondrion	90.41	90.17
HORVU7Hr1G073020.3	Barley	cytosol, mitochondrion, peroxisome	75.43	79.28
TraesCS7B01G206700.1	Wheat	cytosol, nucleus, plasma membrane, plastid	78.58	78.68
TraesCS7A01G306400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	78.32	78.52
TraesCS7D01G303200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	77.92	78.13
Os08t0143400-01	Rice	nucleus	76.22	76.02
GSMUA_Achr5P26260_001	Banana	plastid	55.45	60.98
CDY55139	Canola	endoplasmic reticulum, extracellular	45.2	59.11
AT3G13682.1	Thale cress	cytosol	54.8	55.9
CDY51731	Canola	cytosol	53.75	55.87
Bra021500.1-P	Field mustard	cytosol	53.61	55.81
VIT_19s0014g03430.t01	Wine grape	cytosol	55.32	55.76
CDY55136	Canola	cytosol	53.35	55.54
KRH55370	Soybean	nucleus	53.75	55.05
PGSC0003DMT400049658	Potato	cytosol	54.01	54.15
Solyc07g063500.2.1	Tomato	cytosol, mitochondrion, nucleus	52.83	53.24
Solyc07g063450.1.1	Tomato	cytosol	54.27	45.14
EES12649	Sorghum	plastid	45.47	42.82
OQU85392	Sorghum	nucleus	45.99	41.18
EES13072	Sorghum	plastid	20.24	31.36
EES12883	Sorghum	cytosol, mitochondrion, peroxisome, plastid	19.84	31.26
EES13070	Sorghum	cytosol, peroxisome, plastid	19.84	31.01
EES03507	Sorghum	mitochondrion	18.79	27.77
KXG39969	Sorghum	vacuole	17.08	25.49
OQU80059	Sorghum	peroxisome	15.77	21.43
EER94594	Sorghum	nucleus	29.96	12.67

Protein Annotations

Gene3D:1.10.10.10	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10	InterPro:Amino_oxidase	UniProt:C5YN37
EnsemblPlants:EES14528	ProteinID:EES14528	ProteinID:EES14528.2	InterPro:FAD/NAD-bd_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016491	GO:GO:0019538	GO:GO:0051568
GO:GO:0055114	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR036188	InterPro:IPR036388	PFAM:PF01593
PFAM:PF04433	PFscan:PS50934	PANTHER:PTHR10742	PANTHER:PTHR10742:SF347	EnsemblPlantsGene:SORBI_3007G036700	SUPFAM:SSF46689
SUPFAM:SSF51905	SUPFAM:SSF54373	InterPro:SWIRM	unigene:Sbi.7004	UniParc:UPI000B425D89	InterPro:WH-like_DNA-bd_sf
RefSeq:XP_002445033.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:3322440..3327410

Molecular Weight (calculated)

83400.5 Da

IEP (calculated)

6.390

GRAVY (calculated)

-0.161

Length

761 amino acids

Sequence
(BLAST)

001: MSSSSPPRRP QRRAASTRPP SYDESLLDAE LEGLLGDAAS RRVRRLRRLS AEERQRETET EALIALSLGF PIDELLPEER PLLPPHIANA PNDYIVVRNH
101: ILASWRADPR APLPLGCVLE TVASSYDRLV AAAYGYLARA GHINFGVSAA FPAAPPPDAA TQGAAAVLVV GAGLAGLAAA RQLLRFGLRV LVLEGRSRPG
201: GRVYTARLGE DKAAVELGGS VITGIHANPL GVLARQLGLP LHKVRDRCPL YYPDGRIVET RLDRTIDLVF NTLLDHATKV RESLNEAAER ISLEEAIEKL
301: RRLYHVARTD EEQMVLNWHF ANLEFSNAGC LSELSLAHWD QDDPYEMGGD HCFLAGGNSR LIHALCDGVP VLYEKKVSRI EYGVDGVSVT VEEGQIFQAD
401: MVLCTVPLGV LKSGSIVFDP ELPQEKLGAI QRLGFGLLDK VAMVFPHVFW DENIDTFGCL NKDSSKRGEF FLFYSYHTVS GGAVLIALVA GEAALEFEKV
501: DPIVSLHRVL GILKGIYGPK GVTVPDPIQS VCTRWGSDPF CSGSYSHVRV GSSGADYDIL AESVNDRLFF AGEATNRAYP ATMHGALLSG LREASKIHRA
601: SESLVNSDQK KNSLPKRLKP PNGALLDLFL EPDLEFGRFS FVFSSLTPDD PEATGILRFS LDKRFFLQPN NPELDGDQKD YSSASGAFHL YATVSREQAD
701: QLQKSSEDDR TRLGVLCKDF SVKLMGYDNT CDVGSDLISS ILSARKARKL LQHPKNFKIS R

Best Arabidopsis Sequence Match ( AT3G13682.1 )
(BLAST)

001: MNSPASDETA PRRNRRKVSR KNYDENAMDE LIEKQLGGKA KKKYRTKQDL EKETETEALI ALSVGFPIDE LLEEEIRAGV VRELGGKEQN DYIVVRNHIV
101: ARWRGNVGIW LLKDQIRETV SSDFEHLISA AYDFLLFNGY INFGVSPLFA PYIPEEGTEG SVIVVGAGLA GLAAARQLLS FGFKVLVLEG RSRPGGRVYT
201: QKMGGKDRFA AVELGGSVIT GLHANPLGVL ARQLSIPLHK VRDNCPLYNS EGVLVDKVAD SNVEFGFNKL LDKVTEVREM MEGAAKKISL GEVLETLRVL
301: YGVAKDSEER KLFDWHLANL EYANAGCLSN LSAAYWDQDD PYEMGGDHCF LAGGNWRLIN ALAEGLPIIY GKSVDTIKYG DGGVEVISGS QIFQADMILC
401: TVPLGVLKKR SIKFEPELPR RKQAAIDRLG FGLLNKVAML FPSVFWGDEL DTFGCLNESS INRGEFFLFY AYHTVSGGPA LVALVAGEAA QRFECTEPSV
501: LLHRVLKKLR GIYGPKGVVV PDPIQTVCTR WGSDPLSYGS YSHVRVGSSG VDYDILAESV SNRLFFAGEA TTRQHPATMH GAYLSGLREA SKILHVANYL
601: RSNLKKPVQR YSGVNINVLE DMFKRPDIAI GKLSFVFNPL TDDPKSFGLV RVCFDNFEED PTNRLQLYTI LSREQANKIK ELDENSNESK LSCLMNTLGL
701: KLMGANSVLD TGGALISVIA NARRGRSRSH VVAGQCNLPL NPLHFN

Arabidopsis Description

LDL2Lysine-specific histone demethylase 1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.