Factsheet for Solyc07g063500.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049658	Potato	cytosol	93.11	92.62
Solyc07g063450.1.1	Tomato	cytosol	90.86	74.97
KRH55370	Soybean	nucleus	66.89	67.97
VIT_19s0014g03430.t01	Wine grape	cytosol	67.95	67.95
CDY55139	Canola	endoplasmic reticulum, extracellular	50.73	65.81
CDY55136	Canola	cytosol	63.18	65.25
Bra021500.1-P	Field mustard	cytosol	63.05	65.12
CDY51731	Canola	cytosol	63.05	65.03
AT3G13682.1	Thale cress	cytosol	63.44	64.21
GSMUA_Achr5P26260_001	Banana	plastid	51.66	56.36
Solyc02g033080.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	25.03	54.47
HORVU7Hr1G073020.3	Barley	cytosol, mitochondrion, peroxisome	51.39	53.59
TraesCS7D01G303200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	53.11	52.83
EES14528	Sorghum	mitochondrion, nucleus, plasma membrane, plastid	53.24	52.83
Zm00001d024647_P001	Maize	mitochondrion	53.24	52.69
TraesCS7B01G206700.1	Wheat	cytosol, nucleus, plasma membrane, plastid	52.85	52.5
TraesCS7A01G306400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	52.72	52.44
Os08t0143400-01	Rice	nucleus	52.45	51.9
Solyc05g055590.1.1	Tomato	cytosol	42.78	50.87
Solyc05g055580.1.1	Tomato	cytosol, peroxisome, plastid	29.8	38.79
Solyc11g008320.1.1	Tomato	nucleus	50.86	38.25
Solyc07g043590.2.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	20.79	32.04
Solyc12g006370.1.1	Tomato	plastid	20.66	31.97
Solyc03g031880.2.1	Tomato	cytosol	19.47	30.75
Solyc02g081390.2.1	Tomato	cytosol	19.34	29.49
Solyc05g018880.1.1	Tomato	endoplasmic reticulum	18.28	26.95
Solyc07g039310.1.1	Tomato	golgi	18.01	26.51
Solyc03g007160.1.1	Tomato	plasma membrane, vacuole	6.49	26.49
Solyc01g087590.2.1	Tomato	vacuole	14.17	21.53
Solyc12g008850.1.1	Tomato	cytosol	17.88	20.09
Solyc04g081100.2.1	Tomato	nucleus	31.92	11.6

Protein Annotations

Gene3D:1.10.10.10	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10	InterPro:Amino_oxidase	InterPro:FAD/NAD-bd_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:Homeobox-like_sf	InterPro:IPR007526
InterPro:IPR036188	InterPro:IPR036388	UniProt:K4CH33	PFAM:PF01593	PFAM:PF04433	PFscan:PS50934
PANTHER:PTHR10742	PANTHER:PTHR10742:SF347	SUPFAM:SSF46689	SUPFAM:SSF51905	SUPFAM:SSF54373	InterPro:SWIRM
EnsemblPlantsGene:Solyc07g063500.2	EnsemblPlants:Solyc07g063500.2.1	UniParc:UPI000276BE48	InterPro:WH-like_DNA-bd_sf	SEG:seg	:

Description

No Description!

Coordinates

chr7:+:65969267..65972200

Molecular Weight (calculated)

83579.4 Da

IEP (calculated)

7.060

GRAVY (calculated)

-0.208

Length

755 amino acids

Sequence
(BLAST)

001: MEIPNSGGSV SRRPVRRRFA SRNYDETVMD KIIDEQLGSP VGKKIRTKKD LEKETEKEAL IALSLGFPID DLLEEEKKAG VVSELDGKEQ NDYIVVRNHI
101: LAKWRENVHI WLNKGRIREI ISVEYEHLVA IAYDFLLSNG YINFGVSSSF ESNLPEEPRE GSVIIIGAGL AGLAAARQLM AFGFKVTVLE GRNRPGGRVY
201: SEKMGWKGKF AAVDLGGSVI TGIHANPLGV LARQLSIPLH SVRDKCPLYK PDGAPVDSVV DSTVELIFNK LLDKVAELRK IVSGLATDVS LGSVLETLRR
301: LYCVAKTKEE KQLLHWHFAN LEYANAGCLS ELSAAYWDQD DPYEMDGDHC FLVGGNRAMI RALCKGVPIF YGKTVQTIKY GNEGVEVIAG DQLFQADMVL
401: CTVPLGVLKR RSIRFEPELP EKKLEAIDRL GFGLLNKVAM VFPHIFWGED LDTFGCLNHH SHRRGEYFLF YSYHTVSGGP VLIALVAGDA AQLFESTDPS
501: TLINRVINIL KGIYEQKGIS VPDPIQSICT KWGSDPFSFG SYSHVRVQSS GSDYDILAEN LGGRLFFAGE ATIRQHPATM HGAYLSGLRE ASHISQSMKA
601: RQNNPRRTVS KNVRPSNDTL EELFEKPDLA FGKLLFVFDP LTCDSNSLGL MRVTFGKSND ELNSEEVDNM PQHLLNPSLQ LYTVVSREQA HELQLVKEGN
701: NCKLLDLLEG LGLKLVGANG LGVQGHTLAA KIVKGRRSRS YTAKQKAGES SSQLP

Best Arabidopsis Sequence Match ( AT3G13682.1 )
(BLAST)

001: MNSPASDETA PRRNRRKVSR KNYDENAMDE LIEKQLGGKA KKKYRTKQDL EKETETEALI ALSVGFPIDE LLEEEIRAGV VRELGGKEQN DYIVVRNHIV
101: ARWRGNVGIW LLKDQIRETV SSDFEHLISA AYDFLLFNGY INFGVSPLFA PYIPEEGTEG SVIVVGAGLA GLAAARQLLS FGFKVLVLEG RSRPGGRVYT
201: QKMGGKDRFA AVELGGSVIT GLHANPLGVL ARQLSIPLHK VRDNCPLYNS EGVLVDKVAD SNVEFGFNKL LDKVTEVREM MEGAAKKISL GEVLETLRVL
301: YGVAKDSEER KLFDWHLANL EYANAGCLSN LSAAYWDQDD PYEMGGDHCF LAGGNWRLIN ALAEGLPIIY GKSVDTIKYG DGGVEVISGS QIFQADMILC
401: TVPLGVLKKR SIKFEPELPR RKQAAIDRLG FGLLNKVAML FPSVFWGDEL DTFGCLNESS INRGEFFLFY AYHTVSGGPA LVALVAGEAA QRFECTEPSV
501: LLHRVLKKLR GIYGPKGVVV PDPIQTVCTR WGSDPLSYGS YSHVRVGSSG VDYDILAESV SNRLFFAGEA TTRQHPATMH GAYLSGLREA SKILHVANYL
601: RSNLKKPVQR YSGVNINVLE DMFKRPDIAI GKLSFVFNPL TDDPKSFGLV RVCFDNFEED PTNRLQLYTI LSREQANKIK ELDENSNESK LSCLMNTLGL
701: KLMGANSVLD TGGALISVIA NARRGRSRSH VVAGQCNLPL NPLHFN

Arabidopsis Description

LDL2Lysine-specific histone demethylase 1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.