Factsheet for Solyc12g006370.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
peroxisome 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074125	Potato	plastid	98.57	98.57
Solyc07g043590.2.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	86.89	86.53
VIT_12s0028g01120.t01	Wine grape	cytosol	80.33	80.0
CDY55500	Canola	peroxisome	79.1	78.78
Bra004737.1-P	Field mustard	peroxisome	78.89	78.57
CDY14867	Canola	peroxisome	78.69	78.37
CDY30376	Canola	peroxisome	78.69	78.37
Bra037741.1-P	Field mustard	peroxisome	77.87	78.35
KRH73583	Soybean	cytosol, peroxisome, plastid	78.07	78.23
CDY53655	Canola	peroxisome	78.48	78.16
AT2G43020.1	Thale cress	peroxisome	78.28	77.96
KRH14536	Soybean	cytosol, mitochondrion, peroxisome, plastid	77.25	77.1
AT3G59050.1	Thale cress	cytosol, nucleus, peroxisome	76.64	76.64
KRH45972	Soybean	cytosol, mitochondrion, peroxisome, plastid	75.82	75.51
CDX67773	Canola	peroxisome	75.61	75.46
Bra003362.1-P	Field mustard	cytosol	75.41	75.26
CDY42808	Canola	peroxisome	73.36	74.58
CDX83508	Canola	peroxisome	73.16	74.38
Bra000284.1-P	Field mustard	cytosol	72.95	74.17
KRG99036	Soybean	plasma membrane, vacuole	75.61	74.1
Os04t0623300-01	Rice	peroxisome	72.54	73.14
TraesCS2D01G467300.1	Wheat	peroxisome, plastid	71.52	72.11
TraesCS2A01G467300.1	Wheat	peroxisome	71.52	72.11
TraesCS2B01G490100.1	Wheat	peroxisome, plastid	71.31	71.9
EES12883	Sorghum	cytosol, mitochondrion, peroxisome, plastid	70.9	71.64
Zm00001d002266_P003	Maize	peroxisome	70.9	71.64
Zm00001d026334_P001	Maize	peroxisome	70.49	71.37
GSMUA_Achr5P00660_001	Banana	peroxisome	70.7	71.13
Zm00001d036513_P001	Maize	cytosol, peroxisome, plastid	67.62	69.92
CDX98346	Canola	cytosol	75.0	66.67
GSMUA_Achr11P...	Banana	mitochondrion	70.29	66.34
Solyc02g081390.2.1	Tomato	cytosol	64.14	63.23
Solyc03g031880.2.1	Tomato	cytosol	61.89	63.18
Solyc02g033080.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	18.44	25.94
Solyc05g018880.1.1	Tomato	endoplasmic reticulum	26.02	24.8
Solyc03g007160.1.1	Tomato	plasma membrane, vacuole	9.22	24.32
Solyc07g039310.1.1	Tomato	golgi	25.2	23.98
Solyc05g055590.1.1	Tomato	cytosol	31.15	23.94
Solyc01g087590.2.1	Tomato	vacuole	24.18	23.74
Solyc07g063500.2.1	Tomato	cytosol, mitochondrion, nucleus	31.97	20.66
Solyc05g055580.1.1	Tomato	cytosol, peroxisome, plastid	22.75	19.14
Solyc12g008850.1.1	Tomato	cytosol	24.59	17.86
Solyc07g063450.1.1	Tomato	cytosol	31.97	17.05
Solyc11g008320.1.1	Tomato	nucleus	31.76	15.44
Solyc04g081100.2.1	Tomato	nucleus	34.22	8.04

Protein Annotations

Gene3D:3.50.50.60	Gene3D:3.90.660.10	MapMan:8.5.2.2	InterPro:Amino_oxidase	InterPro:FAD/NAD-bd_sf	InterPro:Flavin_amine_oxidase
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114
InterPro:IPR036188	UniProt:K4DBH4	PFAM:PF01593	PRINTS:PR00757	PANTHER:PTHR10742	PANTHER:PTHR10742:SF264
SUPFAM:SSF51905	SUPFAM:SSF54373	EnsemblPlantsGene:Solyc12g006370.1	EnsemblPlants:Solyc12g006370.1.1	TMHMM:TMhelix	UniParc:UPI000276A7BD

Description

No Description!

Coordinates

chr12:-:882961..887464

Molecular Weight (calculated)

54003.6 Da

IEP (calculated)

5.335

GRAVY (calculated)

-0.102

Length

488 amino acids

Sequence
(BLAST)

001: MDSQNKSNRQ VQRAPCFSNV RRRNAASPSV IVIGGGFAGL AAARTLYDAS FQVVVLESRD RIGGRVHTDY SFGFPVDLGA SWLHGVGNEN PLAPLIGKLG
101: LPLYRTSGDN SVLYDHDLES YGLFDMEGNQ VPQDLVSKVG ETFESILKET DLIRKENSED MSIGCAISMV FERRPDLRLN GLGHKVLQWY LCRMEGWFAA
201: DADTISLKCW DQEELLPGGH GLMVRGYKPV INTLAKGLDI RLGHRVTEIV RRYNGVKVTV EDGSTFVADA AIIAVPLGVL KSNCIKFEPR LPEWKEAAIK
301: ELGVGIENKI ILHFQDVFWP NVEFLGVVAE SSYECSYFLN LHKATGHSVL VYMPAGQLAR DIGELSDEAA ANFAFTQLKR ILPNATAPIQ YLVSHWGTDI
401: NSLGSYSYDT VGKPHDLYEK LRIPVDNLFF AGEATSADYP GSVHGAYSTG LLAAEDCRMR VLERHGELDI FQPAMDEETL IPILISRM

Best Arabidopsis Sequence Match ( AT2G43020.1 )
(BLAST)

001: MESRKNSDRQ MRRANCFSAG ERMKTRSPSV IVIGGGFGGI SAARTLQDAS FQVMVLESRD RIGGRVHTDY SFGFPVDLGA SWLHGVCKEN PLAPVIGRLG
101: LPLYRTSGDN SVLYDHDLES YALFDMDGNQ VPQELVTQIG VTFERILEEI NKVRDEQDAD ISISQAFSIV FSRKPELRLE GLAHNVLQWY VCRMEGWFAA
201: DAETISAKCW DQEELLPGGH GLMVRGYRPV INTLAKGLDI RVGHRVTKIV RRYNGVKVTT ENGQTFVADA AVIAVPLGVL KSGTIKFEPK LPEWKQEAIN
301: DLGVGIENKI ILHFEKVFWP KVEFLGVVAE TSYGCSYFLN LHKATGHPVL VYMPAGQLAK DIEKMSDEAA ANFAVLQLQR ILPDALPPVQ YLVSRWGSDV
401: NSMGSYSYDI VGKPHDLYER LRVPVDNLFF AGEATSSSFP GSVHGAYSTG LMAAEDCRMR VLERYGELDL FQPVMGEEGP ASVPLLISRL

Arabidopsis Description

PAO2Probable polyamine oxidase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKX5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.