Factsheet for VIT_12s0028g01120.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
peroxisome 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73583	Soybean	cytosol, peroxisome, plastid	81.63	82.14
KRH14536	Soybean	cytosol, mitochondrion, peroxisome, plastid	81.43	81.6
Solyc07g043590.2.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	80.61	80.61
Solyc12g006370.1.1	Tomato	plastid	80.0	80.33
Bra037741.1-P	Field mustard	peroxisome	79.18	80.0
PGSC0003DMT400041150	Potato	cytosol, mitochondrion, peroxisome, plastid	80.0	80.0
CDY14867	Canola	peroxisome	80.0	80.0
AT2G43020.1	Thale cress	peroxisome	79.8	79.8
CDY30376	Canola	peroxisome	79.59	79.59
CDY55500	Canola	peroxisome	79.39	79.39
PGSC0003DMT400074125	Potato	plastid	78.98	79.3
Bra004737.1-P	Field mustard	peroxisome	79.18	79.18
KRH45972	Soybean	cytosol, mitochondrion, peroxisome, plastid	79.18	79.18
CDY53655	Canola	peroxisome	79.18	79.18
KRG99036	Soybean	plasma membrane, vacuole	80.0	78.71
AT3G59050.1	Thale cress	cytosol, nucleus, peroxisome	77.96	78.28
CDY42808	Canola	peroxisome	75.92	77.5
CDX67773	Canola	peroxisome	77.14	77.3
CDX83508	Canola	peroxisome	75.71	77.29
Bra003362.1-P	Field mustard	cytosol	76.94	77.1
Bra000284.1-P	Field mustard	cytosol	74.9	76.46
GSMUA_Achr5P00660_001	Banana	peroxisome	73.88	74.64
Os04t0623300-01	Rice	peroxisome	72.65	73.55
Zm00001d002266_P003	Maize	peroxisome	71.84	72.88
TraesCS2A01G467300.1	Wheat	peroxisome	71.84	72.73
TraesCS2D01G467300.1	Wheat	peroxisome, plastid	71.84	72.73
TraesCS2B01G490100.1	Wheat	peroxisome, plastid	71.63	72.52
EES12883	Sorghum	cytosol, mitochondrion, peroxisome, plastid	71.43	72.46
Zm00001d026334_P001	Maize	peroxisome	71.22	72.41
GSMUA_Achr11P...	Banana	mitochondrion	74.29	70.41
Zm00001d036513_P001	Maize	cytosol, peroxisome, plastid	67.76	70.34
CDX98346	Canola	cytosol	76.53	68.31
VIT_04s0043g00220.t01	Wine grape	plastid	64.29	64.29
VIT_17s0053g00880.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	30.61	58.82
VIT_01s0127g00770.t01	Wine grape	cytosol	5.1	27.47
VIT_01s0127g00750.t01	Wine grape	golgi, vacuole	25.1	25.15
VIT_13s0064g00390.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	25.71	25.05
VIT_01s0127g00800.t01	Wine grape	extracellular, plasma membrane, vacuole	24.49	24.24
VIT_03s0017g01000.t01	Wine grape	nucleus	31.22	22.6
VIT_11s0016g02180.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	23.88	22.54
VIT_01s0127g00780.t01	Wine grape	golgi, vacuole	22.86	22.18
VIT_19s0014g03430.t01	Wine grape	cytosol	32.04	20.79
VIT_13s0019g04820.t01	Wine grape	nucleus	31.22	14.91
VIT_18s0001g13650.t01	Wine grape	nucleus	12.86	5.38
VIT_18s0001g13640.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	1.02	0.95

Protein Annotations

EntrezGene:100245491	wikigene:100245491	Gene3D:3.50.50.60	Gene3D:3.90.660.10	MapMan:8.5.2.2	InterPro:Amino_oxidase
ProteinID:CBI22064	ProteinID:CBI22064.3	UniProt:E0CTZ8	InterPro:FAD/NAD-bd_sf	EMBL:FN595235	InterPro:Flavin_amine_oxidase
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114
InterPro:IPR036188	EntrezGene:LOC100245491	wikigene:LOC100245491	PFAM:PF01593	PRINTS:PR00757	PANTHER:PTHR10742
PANTHER:PTHR10742:SF264	SUPFAM:SSF51905	SUPFAM:SSF54373	TIGR:TC57749	TIGR:TC65187	TIGR:TC70620
UniParc:UPI0001984342	ArrayExpress:VIT_12s0028g01120	EnsemblPlantsGene:VIT_12s0028g01120	EnsemblPlants:VIT_12s0028g01120.t01	unigene:Vvi.7653	RefSeq:XP_002282970
RefSeq:XP_002282970.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:+:1682201..1691707

Molecular Weight (calculated)

54785.5 Da

IEP (calculated)

5.485

GRAVY (calculated)

-0.146

Length

490 amino acids

Sequence
(BLAST)

001: MESSERSNRQ LRRALCYANI ERQQATSPSV IVIGAGMAGI AAARALHDAS FRVVLLESRD RIGGRVHTDY SFGFPVDLGA SWLHGVCKEN PLAPLISRLG
101: LPLYRTSGDN SVLYDHDLES YALFDMDGNQ VPQELVREIG VAFEKILEET DKVRQEHSED MPILDAFKIV FERRPDLRLE GLAHKVLQWY LCRMEGWFAA
201: DADNISLKSW DQEELLPGGH GLMVRGYIPV INTLAKGLDI HLNHRVTKIV RRYNGVKVTV EDGRSFVADA AIVAVPIGVL KSSRIKFEPR LPEWKEEAIA
301: DIGVGIENKI ALHFDKVFWP NVEFLGVVAD TSYGCSYFLN LHKATSHSVL VYMPAGQLAK DIEKMSDEAA ANFAFMQLKK ILPEASDPIQ YLVSRWGTDE
401: NSLGSYTYDA VGKPHDLYER LRVPVDNLFF AGEATSVNYP GSVHGAFSTG TLAAEECRMR VLERYGELDL FQPAMGEETS FSIPLQISRM

Best Arabidopsis Sequence Match ( AT2G43020.1 )
(BLAST)

001: MESRKNSDRQ MRRANCFSAG ERMKTRSPSV IVIGGGFGGI SAARTLQDAS FQVMVLESRD RIGGRVHTDY SFGFPVDLGA SWLHGVCKEN PLAPVIGRLG
101: LPLYRTSGDN SVLYDHDLES YALFDMDGNQ VPQELVTQIG VTFERILEEI NKVRDEQDAD ISISQAFSIV FSRKPELRLE GLAHNVLQWY VCRMEGWFAA
201: DAETISAKCW DQEELLPGGH GLMVRGYRPV INTLAKGLDI RVGHRVTKIV RRYNGVKVTT ENGQTFVADA AVIAVPLGVL KSGTIKFEPK LPEWKQEAIN
301: DLGVGIENKI ILHFEKVFWP KVEFLGVVAE TSYGCSYFLN LHKATGHPVL VYMPAGQLAK DIEKMSDEAA ANFAVLQLQR ILPDALPPVQ YLVSRWGSDV
401: NSMGSYSYDI VGKPHDLYER LRVPVDNLFF AGEATSSSFP GSVHGAYSTG LMAAEDCRMR VLERYGELDL FQPVMGEEGP ASVPLLISRL

Arabidopsis Description

PAO2Probable polyamine oxidase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKX5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.