Factsheet for VIT_18s0001g13650.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0017g01000.t01	Wine grape	nucleus	8.96	15.51
VIT_19s0014g03430.t01	Wine grape	cytosol	8.45	13.11
VIT_12s0028g01120.t01	Wine grape	cytosol	5.38	12.86
VIT_04s0043g00220.t01	Wine grape	plastid	4.78	11.43
VIT_13s0019g04820.t01	Wine grape	nucleus	9.39	10.72
VIT_01s0127g00750.t01	Wine grape	golgi, vacuole	3.75	9.0
VIT_17s0053g00880.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	1.88	8.63
VIT_13s0064g00390.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	3.67	8.55
VIT_11s0016g02180.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	3.67	8.29
VIT_01s0127g00800.t01	Wine grape	extracellular, plasma membrane, vacuole	3.41	8.08
VIT_01s0127g00780.t01	Wine grape	golgi, vacuole	3.41	7.92
VIT_01s0127g00770.t01	Wine grape	cytosol	0.43	5.49
VIT_18s0001g13640.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	0.0	0.0

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100255769	wikigene:100255769	Gene3D:3.50.50.60	MapMan:35.1	InterPro:Amino_oxidase
ProteinID:CCB46005	ProteinID:CCB46005.1	UniProt:F6GZR3	InterPro:FAD/NAD-bd_sf	EMBL:FN595227	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR036188
InterPro:IPR036388	EntrezGene:LOC100255769	wikigene:LOC100255769	PFAM:PF01593	PFAM:PF04433	PRINTS:PR00419
PFscan:PS50934	PANTHER:PTHR10742	PANTHER:PTHR10742:SF354	SUPFAM:SSF46689	SUPFAM:SSF51905	InterPro:SWIRM
UniParc:UPI0002109A63	ArrayExpress:VIT_18s0001g13650	EnsemblPlantsGene:VIT_18s0001g13650	EnsemblPlants:VIT_18s0001g13650.t01	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_002280631
RefSeq:XP_002280631.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:-:11640899..11647357

Molecular Weight (calculated)

128234.0 Da

IEP (calculated)

5.559

GRAVY (calculated)

-0.713

Length

1172 amino acids

Sequence
(BLAST)

0001: MDDEEKKSGS KRRLKHIEIG FDSDDDEPIG SIFKLRRQTN PKKVKLGLDS GGKTGEKLKS VEARAEKLVG EDEELGGMDD TLASFRKKLR GPKKDTGSGT
0101: AVVRGSNLNV VELKDVEEGR GIRDYGSDVT MDKGLEKKLK RKSKRSKIVS TKKKTGDSVC QRSEGSSLQD QKEMGLWLEK GSNHSSDENL EDSLSAFVRR
0201: AQSGLIRRSR TSCSKKKRGP QGLEDGLSHR CEGVSEDSHA VVVKIPRSSS GSRLMHENLT SKDSLHPVSD RGLVDLGPEK TKTVENLRPG DGSGEVFNHI
0301: KKILQSVDPI KGVSSVPGAT DDISRSSDDR VDQSSESIME DTNHITALQQ PHSHLVAYSN RSIEHQYSES NRLTERVQEE NTVVPCDSNQ FCDGDSEEFI
0401: HKQMKENSSA SIHKTKLDTQ NLKDVLRHCS MGKTTDLVHG AVQKHVAVAK QGGEIHGSDE GQSSVGFNDA LTQQHEGVAT IYHSSADQKA CSSLSEKGTV
0501: AHCFDDNLLK RPHETVSKGT HKQIPGNSLE VSLKSPSWNS LPGYVKIEEP SKSETGLDFD KSSQNAELHS AYSVLNSMKM GGTSSDSDGP NQIPFTSIEE
0601: PDCASVDLEK EEDALIPDAG LSSIAPTSAG VHESGFASQM DCPEKSVETD HLDESFPLIQ KCDSDFHQNQ PSHDASRGDH VPIHDYLSAS EEANGASSPS
0701: ITPDKNDAYP EDAGSMPDPE IQDNKSSSAQ RTLRKPKKHR QRDMAYEGDA DWEILIHEQS FPQSHLVEDT DQPLRTRGKF DSSLNMVSGT DNGGAAAVSV
0801: GLKARAVGPV EKIKFKEVLK RKGGLQEYLE CRNLILGLWG KDMSRILPLA DCGVADTPSK DEPPRASLIR EIYVFLDHRG YINVGIASEK EKADPDSKHN
0901: YKLLKEKTFG EKSGIAIADS EDGVSTLEPS TLVEPKECLA DDYQEHGCMD ANEFNRKVNL DVSESSCRID DSGTIPTIAP ELMNESCGVE SASMDSAKRD
1001: HNVQFDSDVR KKIIVVGAGP AGLTAARHLQ RHGFSVIVLE ARSRIGGRVY TDHSSLSVPV DLGASIITGV EADVDTERRP DPSSLVCAQL GLELTVLNSD
1101: CPLYDINLDK PSLDSEKIIV DRKMLERNSS KEEVLSPIER RVMDWHFAHL EYGCAARRAS HPFEPGGYGC II

Best Arabidopsis Sequence Match ( AT4G16310.2 )
(BLAST)

0001: MDGKEKKSGS KRGSKVFQFD DDADDDEPIG SLLEIMKHKS SKKDKVETES TGKQRQKQVV EKKLSALGKD SEDMDDTLAS FRKRLKGNKK GVESGTSRVR
0101: NHEGVDTVTN SNLKPIEEAN KNEVQSVLLR ENGASNSIQK CASETGTLLH KFSGKDKAAS PSHEKVETVS SEKEADVFHQ ITKEESEIPM SEKAVELSRV
0201: SVPMPDVHGE VNCTIAPDKH IHLGEPTSES GYYREKNLVM CDCGTQFNFE DRSFESNTQV TLCQKCKYSS HHNASNGGGI QVNTLEDGTA QASPVSIIPC
0301: EDENFRGDAI SLPNSGKPST LQRPERIAKK RKLGNMVYEG DVKWENEQGF LDCQSDKSFK GSDKCGFVPS ISKEIEIGRA AAVTAGLKAQ SVSPIEKIIL
0401: KEVLKRKGSN QEYLVCRNSI LGLWSKNVSR ILPVTECGVT GGPSESELPS ASLIREVYKF LDQRGYINAG ISSVNGKAAS STNQDYDLLQ GRQLEESSMA
0501: SVADSEEGVA FILGQVKAVE STSEGKKCAL QNDERDLVGC ATSEMLESIS KKCEASIIDD NKRSVSMNAL QDSTASNVEK HPETFSVAKP ALSSTLSSAH
0601: SNQMRGRDCV PCEVIDEKKV IVIGAGPAGL TAARHLQRQG FSVTVLEARS RVGGRVFTDR SSLSVPVDLG ASIITGIEAD VPSERMPDPS VLVCNQLGLE
0701: LSVLHGFCPL YDTVTGKKVP AELDDALQAE FNSLIDDVDL LVEEIGKERA NKMSLEDGLE YGLQRLRMPH DKVNIDKFGL LNSSSKTGIR GPFMQDESWK
0801: DDFLNPLERR VMNWHFAHTE YGCAAVLKEV SLPHWNQDEF YGGFGGPHAM IKGGYSRVVE SLAEGLDIHL NKIVSDVSYV SDVSAMDNSK HKVRVSTSNG
0901: CEYLGDAVLV TVPLGCLKAE TIKFSPPLPD WKYASIKQLG FGVLNKVVLE FPTVFWDDSV DYFGATAEET DLRGECFMFW NVKKTVGAPV LIALVVGKAA
1001: FEYTNKSKSE HVNHAMMVLR KLFGGDLVPD PVASVVTDWG TDPYSYGAYS YVAIGASGED YDVLGRPVQN CLFFAGEATC KEHPDTVGGA MMTGVREAVR
1101: IIDILRSGND YTAEIETLEK AQRKSVPVRD EVRDLIKRLE VVELSNVLAR QSLLRNMFFS AKTTVGRLHL AKELLNLPGE TLKSFAGTKE GLAVLNSWIL
1201: DSMGKNGTQL LRHCVHILVR VTSDLFALRL SGIGKTVKEK VCAHTSRDIR AIASQLVNVW LDLYRKEKAN SGKKSLRQAN TTNTSRIRRK LNSPDTDSKG
1301: KLSNGNDVKT DEEFEDNQLP MSEEEKAVFA EAEAARAAAE AAAKAFSEAY HNTSLQLPKI PSFHKFARRE QYAKMDESDF RKKFPGNVLG RQDCMSEIDS
1401: RNCKVRDWYD FPASCLDLDS ARIPVDNYSQ PSHSNELVSH SKFRECSGES VAADTSFLTG AWVDTGGSSD GFKDSQAIDR WQSQAAAADP EFFNRTLHIK
1501: DEEDSIACST GPPSWKHDQR ANECSVSQVT VNKEPHKNHI RSADRLKQGV VDFVASLLMA PYRAKKIDRD VYKSIMKKTA TKVMQHTTDV EKAMAVTQFL
1601: DSKRKNKIRD FVDKQVDKYM VIPQVPKP

Arabidopsis Description

LDL3Lysine-specific histone demethylase 1 homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:F4JLS1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.