CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018102_P001	Maize	nucleus	96.12	96.23
TraesCS6A01G318300.1	Wheat	nucleus	82.35	85.16
Os02t0755200-01	Rice	nucleus	84.59	84.69
TraesCS6B01G348300.1	Wheat	nucleus	81.88	84.36
HORVU6Hr1G078160.1	Barley	plastid	82.47	80.3
TraesCS6D01G297500.1	Wheat	plastid	82.12	79.59
GSMUA_Achr3P06520_001	Banana	extracellular, nucleus, peroxisome	24.59	67.86
GSMUA_Achr9P14930_001	Banana	nucleus	51.18	62.14
VIT_03s0017g01000.t01	Wine grape	nucleus	48.94	61.45
KRH48463	Soybean	cytosol, peroxisome	25.41	59.18
Bra027014.1-P	Field mustard	cytosol	45.88	55.87
CDY46926	Canola	cytosol	45.88	55.87
CDY31848	Canola	nucleus	45.65	55.35
PGSC0003DMT400095293	Potato	nucleus	52.59	55.05
KRH39215	Soybean	nucleus	52.24	52.92
AT1G62830.1	Thale cress	nucleus	51.65	52.01
KRH48462	Soybean	nucleus, plastid	22.12	51.09
EES12649	Sorghum	plastid	45.41	47.77
EES14528	Sorghum	mitochondrion, nucleus, plasma membrane, plastid	41.18	45.99
EES13070	Sorghum	cytosol, peroxisome, plastid	17.29	30.18
EES13072	Sorghum	plastid	17.41	30.14
EES12883	Sorghum	cytosol, mitochondrion, peroxisome, plastid	16.47	28.99
EES03507	Sorghum	mitochondrion	16.47	27.18
KXG39969	Sorghum	vacuole	15.76	26.27
OQU80059	Sorghum	peroxisome	14.59	22.14
EER94594	Sorghum	nucleus	29.41	13.9

Protein Annotations

Gene3D:1.10.10.10	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10	EntrezGene:8075687	UniProt:A0A1Z5RNR0
InterPro:Amino_oxidase	InterPro:FAD/NAD-bd_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016491	GO:GO:0016575	GO:GO:0019538	GO:GO:0048364	GO:GO:0051568	GO:GO:0055114
InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR036188	InterPro:IPR036388	EnsemblPlants:OQU85392	ProteinID:OQU85392
ProteinID:OQU85392.1	PFAM:PF01593	PFAM:PF04433	PFscan:PS50934	PANTHER:PTHR10742	PANTHER:PTHR10742:SF353
EnsemblPlantsGene:SORBI_3004G231200	SUPFAM:SSF46689	SUPFAM:SSF51905	SUPFAM:SSF54373	InterPro:SWIRM	UniParc:UPI0001A855AE
InterPro:WH-like_DNA-bd_sf	RefSeq:XP_002452532.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:58042578..58045350

Molecular Weight (calculated)

91164.5 Da

IEP (calculated)

5.373

GRAVY (calculated)

-0.121

Length

850 amino acids

Sequence
(BLAST)

001: MEEGSKAQLP SPSHTEAMEQ LAPVPMDQDE GREAAETMEE EEATAADVSD AADPMEDGEA AGDSAAAAEP MEDDAPTSSP TPSAPSATAA VDDSTIARKR
101: RRRKKQFPGM IPTAGVRVLR GSSSSSSHTA AHLTGVPRRR GRPPTSSSLR LARELDSEAL IALAAGFPAD SLSEDEIVAA VLPRIGGAEQ ANYLVVRNHI
201: VALWRSNPLS PVAANAALAS IRAEHAPLVA AAHSFLSEHA YINFGLAPAV LSLPPQPPPS SPTPSILIVG AGLAGLAAAR HLIAFGFKVA VIEGRFRPGG
301: RVFTKTMRSS AVEYPDTVAA ADLGGSVLTG INGNPLGVIA RQLGFPLHKV RDKCPLYLPD GRPVDPDMDA RVEAAFNQLL DKVCQLRQVI ADGVPHGVDL
401: SLGMALEAFR AAHGVAAEHE ERMLLDWHLA NLEYANAAPL ADLSMAFWDQ DDPYEMGGDH CFIPGGNSQF VRAFADGIPI FYGQNVKRIQ YGRDGVMVHT
501: DKQAFCGDMV LCTVPLGVLK KGDIKFVPEL PAQKKEAIQR LGFGLLNKVV MLFPHDFWDG TIDTFGHLTE DSGQRGEFFL FYSYSSVSGG PLLIALVAGE
601: SAVKFEQASP MENVEKVLET LRKIFSPKGI DVPNPLQAIC TRWGTDRFTY GSYSYVAIGA SGDDYDILAE SVHDRVFFAG EATNRRYPAT MHGALLSGYR
701: EAANILRAVR RRAKNVNSPE KMDINVEVKV GVNGEVKDTD KDSCIDLDDL FRSPDAAFGG FSVLHDPSTF EPDSVSLLRV GIGARKLGSG SLFLYGLIMR
801: KHVVVLAAIE GDEQRLSTMY RDFGTKLVGL DSLGDAGESL ISRIKAAARK

Best Arabidopsis Sequence Match ( AT1G62830.1 )
(BLAST)

001: MSTETKETRP ETKPEDLGTH TTVDVPGEEP LGELIADDVN EVVSDASATE TDFSLSPSQS EQNIEEDGQN SLDDQSPLTE LQPLPLPPPL PVEARISESL
101: GEEESSDLVT EQQSQNPNAA EPGPRARKRR RRKRFFTEIN ANPAFSRNRR TSVGKEVDSE ALIAMSVGFP VYSLTEEEIE ANVVSIIGGK DQANYIVVRN
201: HIIALWRSNV SNWLTRDHAL ESIRAEHKTL VDTAYNFLLE HGYINFGLAP VIKEAKLRSF DGVEPPNVVV VGAGLAGLVA ARQLLSMGFR VLVLEGRDRP
301: GGRVKTRKMK GGDGVEAMAD VGGSVLTGIN GNPLGVLARQ LGLPLHKVRD ICPLYLPNGE LADASVDSKI EASFNKLLDR VCKLRQSMIE ENKSVDVPLG
401: EALETFRLVY GVAEDQQERM LLDWHLANLE YANATLLGNL SMAYWDQDDP YEMGGDHCFI PGGNEIFVHA LAENLPIFYG STVESIRYGS NGVLVYTGNK
501: EFHCDMALCT VPLGVLKKGS IEFYPELPHK KKEAIQRLGF GLLNKVAMLF PCNFWGEEID TFGRLTEDPS TRGEFFLFYS YSSVSGGPLL VALVAGDAAE
601: RFETLSPTDS VKRVLQILRG IYHPKGIVVP DPVQALCSRW GQDKFSYGSY SYVAVGSSGD DYDILAESVG DGRVFFAGEA TNRQYPATMH GAFLSGMREA
701: ANILRVARRR ASSSALNPNQ ICIDKEEEVD EEEDRCLDQL FETPDLTFGN FSVLFTPNSD EPESMSLLRV RIQMEKPESG LWLYGLVTRK QAIELGEMDG
801: DELRNEYLRE KLGLVPVERK SLSQEGESMI SSLKAARLNR QIFD

Arabidopsis Description

LDL1Lysine-specific histone demethylase 1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.